Carassius auratus (goldfish): 113062586
Help
Entry
113062586 CDS
T07313
Symbol
apaf1
Name
(RefSeq) apoptotic protease-activating factor 1
KO
K02084
apoptotic protease-activating factor
Organism
caua
Carassius auratus (goldfish)
Pathway
caua04115
p53 signaling pathway
caua04210
Apoptosis
caua05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
caua00001
]
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
113062586 (apaf1)
04115 p53 signaling pathway
113062586 (apaf1)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
113062586 (apaf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
APAF1_C
NB-ARC
WDR55
EIF3I
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
APAF-1-like_WHD
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
Beta-prop_EML
WDR90_beta-prop_4th
Beta-prop_WDR75_1st
NBCH_WD40
Beta-prop_WDR19_1st
CARD
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
RMC1_N
Beta-prop_HPS5
Beta-prop_IFT140_1st
Beta-prop_WDR35_TULP_N
Beta-prop_EIPR1
Beta-prop_NWD2_C
Beta-prop_NUP159_NUP214
Beta-prop_Vps41
WD40_like
PEP5_VPS11_N
Ge1_WD40
eIF2A
Beta-prop_DCAF4
WD40_RFWD3
PROPPIN
Beta-prop_Nup120_160
WDR54
CARD_2
Beta-prop_IFT140_2nd
AAA_16
Dark_WHD
DUF7099
Motif
Other DBs
NCBI-GeneID:
113062586
NCBI-ProteinID:
XP_026088310
Ensembl:
ENSCARG00000023824
UniProt:
A0A6P6LUW9
LinkDB
All DBs
Position
4:complement(21946627..21968245)
Genome browser
AA seq
1261 aa
AA seq
DB search
MEERARSCLLRSKTTLEQDIKASYLMDHMVSDGVLTNEEESRVLSKPTRKEQAAALLEVL
LRKDNRAYISFYNALIRESYGDLANLLHSDLPLLSPEGEKSFADGVSPSVQVILSEGGVP
QRPMVFVNRPALLNLIREKLYRLQNTPGWVTVFGMAGSGKSVMAAEAVRDRALIKECFPG
GVHWVSLGQCERADLLVRMQSLCFRLEQGQSSEASLRPPCSVEEAKERLRFLMLRKFPRS
LLILDDVWDSSTLRSFDIQCRVLLTTRNRSLSDSVSGTSFEVPVESGLDEEKGLEILALY
VNEKPQKLPEQARSIVSECKGSPLVVSLIGALLREFPDRWSYYLRQLQKKQFKRIRKSSS
YDYEALDQAMDASLQVLEPEHRDLYRDLSIMQKDVKVPAKVLSVLWDLELEEVEDVLQEF
VNKSLLFRDCNQRPYHYYLHDLQLDFLIEQNRDQIAELHKKLVRQYQQFYNERPPSSGDI
DRSYWYRFLPYHMSKAGLSKELYSLMFSLDWVKEKAQFMGCAHLINDYVEYGEMLDKENS
EVRLQFQEFLSLNGHHLEQKPFPDVVQLALSQPVCSEVYRQALMQAQKRASRGQLYLDWV
NKNNQDSLSRLVMHPHQGSVYYAGFSKDGSKIASCGANKALRVFKTTSGEKLLELQAHDE
DVLCCAFSPDDRYIATCSSDRKVKLWNVERGTLIREFGEEHEEQINHCQFTNTGRRVLLA
TCSNDKFNNTKLWNPNKPTSQNTMFGHMEPVNHCCFSPNDAYLATSSSDGTLKLFEVSST
NEWKSIDVSNFFPESDDEIKAIVKCSTWSADGSRIICAARNAVFVFDVKTSDMLLEMKTS
RLSTVQYCHACPNSSLLAVALSHYTVELWNFETSKKQAECNGHLSWVHCVQFSPDGSLLL
SSSDDQTIRLWETDQVHTSSAAALKRDSDVLFSQSDVTIVVPDSRNRLQVRTGLAGAVVF
ESEELPSRIRCTCISRNASFVALGTENGTVQVLEVPSGRTSQMLTGHTRTVHHCQFTDDG
ETLVTSSEDTTVRVWKWRTGEYLVLEGHKEPVRKFHLLNSSTSSHLFSWSFDGTVKVWDL
NRGQMLQDLECHKGAVLSCDVSSDRRLFVTTSADRTAKVWSSASWEMTFLLEGHKDCVRS
CRFSWDNMLLATGDDNGEIRLWSMLNGALLKTCSRGTKDSMDSFHGGWVTDLHFSPDNGV
LVSTGGYIKWWSVETGEALQTFYTMGANLKKIHVSADFTTFVTVDGIGILYVLKKVEGGS
L
NT seq
3786 nt
NT seq
+upstream
nt +downstream
nt
atggaggaacgtgctcgcagctgcctgctgcgctccaaaaccactctggagcaggacatc
aaagcctcctacttgatggaccacatggtcagcgacggcgtcctgacaaatgaagaagaa
tcaagggtgcttagcaagcctactagaaaagagcaggccgcagccctgttagaggtgcta
ttgaggaaagacaacagggcatacatctccttctacaacgcactgatcagggagagttat
ggcgatctggccaacctccttcatagtgaccttcctctgctcagccccgagggagagaag
agctttgctgatggagtgtctccctctgttcaggtgattctgagtgaaggtggcgtgcct
cagagacccatggtgtttgtgaaccgacccgctctgctcaacctgatccgggagaagctg
taccgactgcagaatacgccaggctgggtcactgtgtttggcatggctggctcagggaag
tctgtgatggctgccgaagctgtccgagaccgtgccctcattaaggagtgttttccaggt
ggcgttcactgggtttctcttggccagtgtgagcgggcagacctgttggtaaggatgcag
tctttgtgtttccgtttggagcagggtcaaagttcagaagccagtctgcggccaccctgc
tccgtggaggaggccaaagagcgcctacggttcctaatgctgcgcaagttccccaggtcc
ctgctgattctggacgacgtctgggacagctcaactctcaggtcctttgatatccagtgc
agagttcttctaaccactcgcaatcgtagtctgtctgactccgtaagcggtacaagcttt
gaagtgcctgtcgagagtggtctagatgaggagaaaggcctggaaattcttgctttgtat
gttaacgagaaaccacagaaacttccagaacaggcccgcagcattgtgagcgaatgtaaa
ggttcccctctggttgtttctctcattggagctttattgagggagttccctgaccgctgg
agctactacctgcgacagctgcagaagaagcagttcaagcggatccgcaagtcatcgtcc
tatgactatgaagctctggaccaggccatggatgccagcctgcaggttttggagcccgaa
cacagagatttgtacagagacctgagcatcatgcagaaagacgtcaaagtgcctgctaag
gttctgtcagtgctgtgggatctggaattggaggaagtggaggatgtcctacaggagttt
gtgaataaatctctgctgtttcgagactgtaaccagcgaccataccactattaccttcat
gatctgcagctggacttcctcattgaacagaatcgtgatcaaattgctgagctgcataaa
aagcttgtccgtcaataccagcagttttataacgaaaggccacccagctctggagatata
gaccgttcgtattggtaccgcttcctcccgtaccacatgtctaaagcaggactgtctaag
gagctttattcactgatgttttccttggactgggtcaaagagaaagctcagtttatggga
tgtgcccatcttatcaacgattatgtagaatatggtgaaatgctagacaaagagaacagt
gaggtgagactgcagtttcaggagttcctgtctttaaacggacatcatttggagcagaag
ccgtttcctgacgtagtgcagttggctctgtctcagcccgtgtgttcagaggtttacaga
caggccttgatgcaggcgcagaagagggccagcagagggcagctctatctggactgggtg
aataaaaataatcaggacagtttgtctcggctggtcatgcatcctcaccaggggtctgta
tactacgctggcttctccaaagatgggagtaaaatcgcctcttgtggggccaacaaggca
ctgcgggtgtttaaaacgacctctggagagaagcttctggagcttcaggctcatgacgaa
gacgttctgtgctgtgccttttctccagatgaccgttacattgcaacgtgctccagtgac
aggaaggttaagttgtggaatgttgagcgaggtactcttatcagagagtttggggaggaa
cacgaggagcagataaaccattgccagttcaccaacacaggccgacgtgtcctgctggcc
acctgctcaaatgacaaattcaacaacactaagctgtggaaccccaacaagccgacctct
caaaacactatgtttggacacatggagcctgtcaatcactgttgcttttctcctaatgat
gcctacctcgccacttcatccagtgacggcaccttgaagctgtttgaggtgtcatctacc
aacgagtggaaatcaattgatgtcagtaatttcttcccagagagtgacgatgaaataaaa
gccatcgtgaagtgcagcacttggtcggccgatggctcacggatcatttgtgctgccaga
aacgctgtgtttgtgtttgacgtgaagacatcagacatgttgttggagatgaagacgagt
cgtctgagcacagtgcagtactgtcacgcatgtcccaacagcagcctgctggccgtggca
ctctctcattacactgtagagttgtggaactttgagaccagtaaaaagcaagccgaatgc
aatggtcacctgagctgggttcattgtgtccagttttctcctgacggctcactcctgttg
tcctcctctgatgatcagaccatcaggctgtgggagacggatcaggttcacacctcctct
gctgcggctctgaagagggattctgatgttctcttctcccaaagtgacgttacaatagtt
gttccagacagcagaaaccgattacaggtacggaccggactggcaggtgccgtcgtgttt
gagagcgaggagttgccgtccaggattcgctgtacatgcatcagcagaaatgcttcgttt
gtggccctgggaactgagaacggaactgtacaggtgttggaggtcccatctggaagaaca
tcacagatgctcacaggtcacactaggactgttcaccactgtcagttcactgatgatggt
gaaaccctcgtcacatcctcagaagacaccactgtccgggtgtggaagtggaggactggt
gagtatctcgtgctggagggccataaggagccggtcaggaagtttcacctgttgaacagc
tctacttcctctcacctgttctcttggtcgtttgatggcactgttaaggtctgggatctg
aacagaggtcagatgctgcaagaccttgaatgtcataagggtgctgtcctgtcatgtgac
gtgtcctccgacagacgtctctttgtcaccacatcggctgataggacggctaaggtgtgg
agcagtgcctcgtgggagatgacttttttgctggagggacacaaggactgcgtccgtagc
tgccggttttcttgggacaacatgctactcgcgaccggcgacgacaacggagaaatcagg
ctgtggagcatgctgaatggagctcttctgaagacctgttcacggggcaccaaggactcc
atggactctttccacggtggatgggtgactgacctgcacttctcccctgataacggggta
ctggtctctacgggcggatacatcaagtggtggagcgtggagaccggagaggccttgcag
acgttctacacgatgggagccaatctgaaaaagatccatgtgtcagctgatttcaccaca
ttcgtcactgtggacggcattggaatcctttacgttttaaagaaggtggagggaggaagc
ctctag
DBGET
integrated database retrieval system
