KEGG   Carassius auratus (goldfish): 113065102
Entry
113065102         CDS       T07313                                 
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm3
  KO
K12622  U6 snRNA-associated Sm-like protein LSm3
Organism
caua  Carassius auratus (goldfish)
Pathway
caua03018  RNA degradation
caua03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:caua00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    113065102
  09123 Folding, sorting and degradation
   03018 RNA degradation
    113065102
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:caua03019]
    113065102
   03041 Spliceosome [BR:caua03041]
    113065102
Messenger RNA biogenesis [BR:caua03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     113065102
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     113065102
Spliceosome [BR:caua03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    113065102
 Complex C
  U2 snRNP components
    113065102
SSDB
Motif
Pfam: LSM TIG_SUH vATP-synt_E DUF150_C
Other DBs
NCBI-GeneID: 113065102
NCBI-ProteinID: XP_026092072
Ensembl: ENSCARG00000058919
UniProt: A0A6P6M766
LinkDB
Position
47:complement(11014704..11017097)
AA seq 102 aa
MADDAEQQQTSNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEET
VTTVEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLRVG
NT seq 309 nt   +upstreamnt  +downstreamnt
atggcggacgacgcggagcagcaacaaaccagcaatacagtagaagagcctctggatctg
atccggctgagtctggatgagcggatctacgtcaagatgaggaacgacagagagctgcgc
ggcagactgcacgcctatgaccagcacttaaacatgatcctcggagatgttgaagagacc
gtgacgactgtggaaatcgatgaagagacgtatgaggagatttacaagtcgacgaagcgt
aacatccccatgctgttcgttcgaggcgatggagtcgtgctggtggctccgccgctgagg
gtcggataa

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