Carassius auratus (goldfish): 113106240
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Entry
113106240 CDS
T07313
Name
(RefSeq) TNF receptor-associated factor 6-like
KO
K03175
TNF receptor-associated factor 6 [EC:
2.3.2.27
]
Organism
caua
Carassius auratus (goldfish)
Pathway
caua04010
MAPK signaling pathway
caua04120
Ubiquitin mediated proteolysis
caua04140
Autophagy - animal
caua04144
Endocytosis
caua04620
Toll-like receptor signaling pathway
caua04621
NOD-like receptor signaling pathway
caua04622
RIG-I-like receptor signaling pathway
caua05132
Salmonella infection
caua05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
caua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
113106240
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
113106240
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
113106240
04140 Autophagy - animal
113106240
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
113106240
04621 NOD-like receptor signaling pathway
113106240
04622 RIG-I-like receptor signaling pathway
113106240
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
113106240
09171 Infectious disease: bacterial
05132 Salmonella infection
113106240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
caua04131
]
113106240
04121 Ubiquitin system [BR:
caua04121
]
113106240
Enzymes [BR:
caua01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
113106240
Membrane trafficking [BR:
caua04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
113106240
Ubiquitin system [BR:
caua04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
113106240
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
zf-TRAF
zf-C3HC4
zf-C3HC4_2
zf-RING_2
zf-C3HC4_3
zf-RING_UBOX
zf-C3HC4_4
zf-RING_5
DM
TRAF3_RING
TRAF6_Z2
zf-TRAF_2
RING_XB3-XBAT31
Sina_ZnF
U-box
ATG16
Motif
Other DBs
NCBI-GeneID:
113106240
NCBI-ProteinID:
XP_026123734
Ensembl:
ENSCARG00000012659
UniProt:
A0A6P6PSA0
LinkDB
All DBs
Position
7:complement(22396653..22403594)
Genome browser
AA seq
543 aa
AA seq
DB search
MACSDMEKLSLDVEPYCDSELSGCAAAMEKEREAYLSPTESTSTISVSASIPPDQQGYDV
EFDPPLESKYECPICLMGLRSAVQTPCGHRFCNSCIKKSIRDTGQKCPVDNEVLLEEQLF
PDNFAKREILSLTVRCPNEGCSDKMELRQLEKHSSQCKFATVQCPQCLESVRKSHLDEHK
SEQCLQRRMTCPACAGSFVFANKQIHEQICPFANTVCEYCEMELIRDQLALHCDTDCLKA
PVACTFSTFGCHVKMPRNELAQHMQEFTQMHMRCMAEFLRSQTLSSCPVPSVGAHSSSDE
RGASARAPDSCQCRQELMNLRETVLELEGRLVRQDQQIRELCIHNETQKNQVTELRRKLS
TLEDATRELEAQQYQGVYVWRLENFSLHLRNQEAGQPIVLHSPPFYTGRPGYKLCLRLHL
QTPSAPRCSNYISLFVHTMQGEFDSQLSWPLQGMIRLAVLDQVEGQHHVEVMETKPDLQA
FQRPTVQRNPKGFGYVTFLHLQALRQRGYMKDDVLLVRCEVTPRFDASLRREGVQPRGSE
PSL
NT seq
1632 nt
NT seq
+upstream
nt +downstream
nt
atggcttgcagtgacatggagaagctcagccttgatgtggagccctactgtgatagtgag
ctctccggttgtgcagcagccatggagaaagaaagggaggcctatctgagccccacagag
agcacctccaccatcagtgtctccgctagtatccctccagaccagcaaggctatgacgtg
gagtttgaccctccgctagagagcaagtatgagtgccctatctgtctgatgggtcttcgc
tcggctgtacagactccatgtggacatcgattctgcaactcgtgcatcaagaagtccatc
agggacacggggcagaaatgtccagttgacaatgaggtgctgcttgaggaacagctcttc
cctgataactttgccaaacgagagatcctctcacttactgtccgatgtcctaatgaagga
tgcagtgataaaatggaattgcgccaactggagaaacactcgtctcagtgcaagtttgcc
acagtgcagtgtcctcagtgtctggaatctgttcgtaagagccatctggatgaacacaag
agtgagcagtgtttacagcggcgtatgacctgccctgcctgtgcagggagcttcgtgttt
gctaataaacagattcatgaacagatttgtcctttcgccaatacagtgtgtgaatattgc
gaaatggagcttattcgggatcagttggccttgcactgtgacacagactgtctgaaagct
cctgtggcctgtactttcagtacttttggttgtcatgtgaagatgccaagaaatgaactg
gcccagcacatgcaggaatttacacagatgcacatgcgttgcatggctgagtttctgcgt
agccagactctcagtagctgcccagtgccctcagttggtgcccactcttcgtcagatgaa
cgtggggcctctgcccgagccccagattcgtgccagtgtagacaggagctgatgaacctg
cgtgaaacggtcttggagctggagggccgactggttcgtcaagatcaacagatccgcgag
ctgtgcatccacaatgagacacagaaaaaccaggtcacagagctacgccggaagctgagc
acactggaggatgccacccgagagctggaagcccagcagtatcaaggcgtctacgtatgg
cgcttggagaacttctcacttcacctgcgcaaccaagaagccggtcaacccatagtcctc
cacagcccacctttctacacgggccggccggggtacaaactctgcctacgactgcatctc
caaactcccagcgccccacgctgttccaactacatctcacttttcgtgcacactatgcag
ggtgagtttgacagccagctctcctggcccttgcagggcatgatccgactggcagtgttg
gaccaggtcgaggggcagcatcacgtggaagtgatggagaccaagccagacctgcaggcc
ttccagaggcccactgtgcaacgtaaccccaagggtttcggctacgtcactttcctgcat
ctacaggctttgcggcagcggggctatatgaaagacgacgtgctgttggtgcgctgtgag
gtcacgccacgattcgacgctagcctcaggagggaaggggtccaacctcgggggtcagaa
ccttcactttga
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integrated database retrieval system
