KEGG   Carassius auratus (goldfish): 113110259
Entry
113110259         CDS       T07313                                 
Name
(RefSeq) lysine-specific demethylase 2B-like isoform X1
  KO
K10276  F-box and leucine-rich repeat protein 10/11 [EC:1.14.11.27]
Organism
caua  Carassius auratus (goldfish)
Pathway
caua03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:caua00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    113110259
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:caua03000]
    113110259
   04121 Ubiquitin system [BR:caua04121]
    113110259
   03036 Chromosome and associated proteins [BR:caua03036]
    113110259
Enzymes [BR:caua01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.27  [histone H3]-dimethyl-L-lysine36 demethylase
     113110259
Transcription factors [BR:caua03000]
 Eukaryotic type
  Zinc finger
   CXXC CpG-binding proteins
    113110259
Ubiquitin system [BR:caua04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   SCF complex
    Target recognizing subunit (F-box)
     113110259
Chromosome and associated proteins [BR:caua03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    113110259
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.1)
     113110259
SSDB
Motif
Pfam: PHD_4 zf-CXXC JHD F-box-like F-box JmjC Cupin_8 LRR_4 RpoY LRR_At1g61320_AtMIF1
Other DBs
NCBI-GeneID: 113110259
NCBI-ProteinID: XP_026130133
Ensembl: ENSCARG00000008813
UniProt: A0A6P6Q9D5
LinkDB
Position
10:20391839..20423135
AA seq 1343 aa
MGNEYALLEATPDYRTTCKSPKMRAASHCVFCQNQKNQNQNELYCQLMETALWAPGATDR
KTDMASSSTWTERSICRRMYDENEDLSDVEEITNIRGFSVEDKLESNSYNSEFVQFMEGK
DFTYEYVQREALRTPLVFQAKDGLGIMMPDPEFTISEIKGLVGSRRAVDVMDVSTQKGSE
MSMAQFVRYYETPEDERDKLLNVISLEFSHTKLENLIKRPTVVDLVDWVDNMWPLHLKQK
QTEATNVMSEMKYPKVQRYCLMSVKGCFTDFHIDFGGTSVWYHVFKGRKVFWLIPPSPHN
LSLYEDWVLSGKQSDIFLGDRSDGCQRVELKQGYTFFIPSGWIHAVYTPEDTLVFGGNIL
HSFNIPMQLTVYEIENRTKVHSKFRYPFFYEMCWYVLERYVNCLTRRSHLSLEFGAHAVE
PKLVTESLVSAPRVDMEEDSCETRLERTEGTSQPSSTVPPCQTFKSPADDSEDSFKSLPS
ECPKTPSGSPGMEHSSKWTHLTEFELNGLKALVEKLESLPETKKCVPEGIEDPQALLDDV
KVVLKEHADDNPKLALTGSPIVCWPKKTGKPRTLNRPKTKMGSSPSAAPGSTAGGVKLSS
SRGSSSARRRRTRCRKCEACTRKECGECHFCKDMKKFGGPGRMKQSCIMRQCIAPVLPHT
AVCLVCGEAGKEDTVENEEDKFNMMLMECSICNEIIHPGCLKEKDSGGVVNDELPNCWEC
PKCNNAGKTGKQKRGPGFKYASNLPGSLLKDQRMNRDVKEEPESNMSTESYTSTVSPAMK
KTEREDNPTCKSEDSFKKRSSKLEDNPLRKKRKLFKNDSDSDSNVKKKKKHSKPEDLSTF
NVLGQIKLEREDDEEYEEDNRQELERRAFSFVPSEEEDGDDKEEEEEDETMKEKRSREEN
GKLVHKTSTAWEGDQSQGSLTQAGPSSDSGVDTQLRSQRKTKRKPRLPNKELSKELSKQL
NQEIQKTEDCLAHQNGRAVKTEPDSDGEDRKPLRNGSSHLRDWLGPKRELNGSLREQVPV
NWIRTTPTPVIRPTPCRSPPKCVQMERHVIRPPPISPPPDGLPLDDGKNHVMRREVWMAV
FSHLTHQDLCVCMRVCKTWNRWCCDKRLWTKIDLNRCKSITPLMLSGIIRRQPVSLDLSW
TNISKKQLSWLINRLPGLRILLLAGCSWAAVSALCTSSCPLLRTLDVQWVEGLNDNQIKD
LLSPPTDNRPGQLDSRSKLRNVENLCLAGLDITDTSLKLIIKHMPSLSQLDLSYCNHITD
QSVNILTAAGTTTRDSLTHINLSACNKVTDLSLTYFKRCGNICHIDLRYCKQVTKEGCEQ
FIAEMSVSVQFRLIEEKLLSKLS
NT seq 4032 nt   +upstreamnt  +downstreamnt
atggggaatgagtatgcccttcttgaagcgaccccagactacagaaccacttgtaaaagc
ccaaaaatgcgagccgcatcacactgtgtattctgtcagaatcagaagaatcagaatcag
aatgagctttattgccagctaatggaaaccgctttgtgggcacctggagcgacggacaga
aaaacggacatggcaagttcttctacctggacagagcgctcgatctgcagaaggatgtac
gatgagaacgaggacttgtcagatgtggaggaaatcacaaacatcaggggcttcagcgtg
gaggacaaacttgagagcaattcatacaacagtgaatttgttcagtttatggagggaaaa
gattttacttatgaatatgttcaaagagaggcactgcgaactccgctcgtatttcaagcc
aaagatggactgggaatcatgatgccagatccagaatttactataagtgaaatcaagggt
ttggttggcagcaggagggctgttgacgtgatggatgttagcacacagaagggctcagag
atgagcatggcacagtttgtccgctactatgagacgcccgaggatgaacgtgacaagctg
ctcaacgtcatcagcctggagttcagtcacaccaaactggagaatttgatcaagagaccc
actgtggtggatctggtggattgggtggacaatatgtggccgctgcatcttaaacagaaa
caaaccgaagccacgaacgtcatgtctgagatgaagtatcccaaagttcagagatactgt
ctgatgagtgtaaaaggctgtttcactgacttccacatcgacttcggcggcacatcagtg
tggtaccatgtcttcaaaggaagaaaggtcttctggctgattcctccaagcccacacaat
ctgtctctgtatgaggactgggtgctgtcaggcaaacagagtgatatcttcctgggtgac
cgttcagacggctgccagcgagtagagctgaaacagggctatacattcttcatcccttca
ggttggatccatgcggtctacactccagaagataccttggtgtttggcggaaatatttta
cacagtttcaacattcccatgcagctcactgtctacgaaattgagaacagaacaaaggtg
cactccaaattccgctaccctttcttctatgagatgtgctggtatgtgttggagaggtac
gtgaactgcttgaccagacgttcgcacctcagcctggagttcggcgctcacgctgttgaa
cccaagcttgttactgagagtctcgtctctgctcctcgggtggacatggaggaggactcg
tgcgagacgcggttagagaggacagaggggacgtcccagccctcctccactgtccctccc
tgtcagaccttcaaatccccggccgatgattctgaagacagcttcaagtccctgccttca
gagtgtcccaagactccgtctggctcacctggaatggaacattccagcaaatggacccac
ttgacagagttcgagctaaatggactcaaggccttggtggagaagctggaatcccttccg
gagacaaagaaatgcgttccagagggcatcgaggatccacaagcactgctagatgacgtg
aaggttgtgttaaaggaacatgcagatgacaatccaaagttggccctcactggttctcct
attgtatgctggccaaagaagaccggcaagccgcggacacttaatcggccaaaaacaaag
atgggctcatctccatcagctgctccaggctcgacagcaggaggagtgaagctctcatcc
agtcgtggttcatctagtgcccggcgcagacggacacgctgcaggaagtgtgaggcatgt
acgcgcaaagagtgtggcgagtgccacttctgcaaagacatgaaaaagtttggtggacca
ggccgcatgaagcagtcctgtatcatgagacagtgcatagcgcctgttctacctcacact
gctgtatgtctggtgtgtggagaggctgggaaagaagacacagtagagaatgaagaggac
aagttcaacatgatgctaatggagtgctctatctgcaacgagatcatccatccaggatgc
ttgaaggagaaagattctggcggtgttgtaaatgacgagttgccaaattgctgggagtgt
ccgaaatgcaataatgctggaaagacagggaaacaaaaaagaggcccagggtttaagtac
gcctctaatctccctggctctctgctcaaagaccagcggatgaaccgggatgtaaaggaa
gagcctgaatcaaacatgtctacagagtcctacacctctactgtttcacctgccatgaag
aagacagaacgagaggacaatcctacctgcaagtcagaagactcctttaagaaacgttct
tccaaactggaggacaacccactccgcaagaagagaaaactctttaaaaatgactcagac
tcagattccaatgtcaaaaaaaagaagaagcactcaaagcctgaagatctctcaaccttt
aatgtcctgggacagataaagctagaaagagaggatgatgaggagtatgaggaggataac
agacaagaattggagaggagagctttcagttttgtgccctcagaagaagaggatggagat
gataaagaggaggaagaagaagatgagacaatgaaggagaagaggagccgagaggagaat
gggaagcttgtgcacaagacctccactgcatgggaaggtgaccaatcacagggcagtttg
acccaggcagggcccagcagcgactcgggtgttgatacacagttgaggagccagcgaaaa
accaaacgcaaacctcgtctgcccaacaaagaactgagcaaagaactaagcaaacaactg
aatcaggagatccagaagacagaggattgtctggctcatcaaaatggcagggcggtgaag
acagaaccagatagtgatggagaagacagaaaaccactgaggaatggcagcagccatctg
agagactggctgggacctaagcgggaactaaatggatccttgcgagagcaggtcccggtt
aactggatcaggactacacctacccctgtcattcggccaacaccttgccgctctccaccc
aaatgtgtacagatggagcgtcatgttattcgcccccctccgatcagcccccctccggat
gggctgcccctagatgatgggaagaatcacgtcatgcggagagaggtgtggatggcagtg
ttcagccacctcacacaccaagacctctgtgtctgcatgcgggtctgcaagacctggaac
agatggtgttgtgataaaagactttggaccaagatcgatctgaaccggtgcaagtcaatc
actccactcatgctgagcggcattatccgcagacagccggtctccctggacctgagttgg
accaacatctccaagaagcagctcagctggctaatcaaccgattacctggtctgaggatt
ctgttgctggcaggctgttcgtgggcagctgtatcagctttatgcacatccagctgtcct
ttactaagaactttagatgtgcagtgggtagagggactcaacgacaaccagataaaagac
ttgctctctccgccaacagataacaggccaggtcagttggacagcagaagtaaactaagg
aacgtggagaatctctgtctagctggtcttgacatcacggatacgtccctgaagctgatc
ataaaacacatgccttcattgtcccaactggaccttagttactgtaaccacatcactgac
cagagtgtgaatatcctcacggcagccggcaccacgaccagagactctcttacacatatc
aacctttcagcttgtaacaaagttacagacctgtcgttgacctacttcaagcgctgcgga
aacatttgtcacatcgacctgcggtactgcaaacaggtgaccaaagagggttgtgagcag
ttcatcgcagagatgtccgtcagtgtgcagttcagactgattgaagaaaaactactgagc
aaactgagctag

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