Caulobacter sp. NIBR1757: AMEJIAPC_02899
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Entry
AMEJIAPC_02899 CDS
T10944
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
caub Caulobacter sp. NIBR1757
Pathway
caub03030
DNA replication
caub03410
Base excision repair
caub03420
Nucleotide excision repair
caub03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
caub00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AMEJIAPC_02899 (ligA)
03410 Base excision repair
AMEJIAPC_02899 (ligA)
03420 Nucleotide excision repair
AMEJIAPC_02899 (ligA)
03430 Mismatch repair
AMEJIAPC_02899 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
caub03032
]
AMEJIAPC_02899 (ligA)
03400 DNA repair and recombination proteins [BR:
caub03400
]
AMEJIAPC_02899 (ligA)
Enzymes [BR:
caub01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AMEJIAPC_02899 (ligA)
DNA replication proteins [BR:
caub03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AMEJIAPC_02899 (ligA)
DNA repair and recombination proteins [BR:
caub03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AMEJIAPC_02899 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AMEJIAPC_02899 (ligA)
MMR (mismatch excision repair)
DNA ligase
AMEJIAPC_02899 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AMEJIAPC_02899 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
PTCB-BRCT
Nlig-Ia
Bep_C_terminal
Motif
Other DBs
NCBI-ProteinID:
WGM39959
LinkDB
All DBs
Position
complement(2952280..2954373)
Genome browser
AA seq
697 aa
AA seq
DB search
MIPVDDLTEAQAVEELTRLADEITRHDLAYHRDDAPTISDADYDALKRRNLDIEDRFPHL
IRENSPSTRVGAPRAEQFSPVTHGTPMLSLDNAFSDEDALEFDARIRRFLKLDETPIRYT
AEPKIDGLSASIRYEKGVLVQGATRGDGRVGEDVTANLLTIRDIPHKLAGSGWPEVIEVR
GEVYLGHAEFAALNAAATEAGDKTYANPRNAAAGSLRQIDSTITARRPLKFFAYAWGLLS
EKFADSQWEALEKLKSWGFQTTPQSVCVEGAEGLLAAYAAMEAARPNLGYDIDGVVYKVD
NLDWQRRLGFVSRAPRWGIARKFPAEQARTVLEAIDLQVGRTGAVTPVARLRPVTVGGVS
VTNATLHNADEIARKDLRVGDTVIVQRAGDVIPQIVGAILEARPEGAEPFAFPDHCPCPL
KTPLARETTASGAETVVRRCTGELACPFQRIEHLKHFVSRRAFDIEGLGEKQLQGFFDDG
MIREPADIFLLEERDKTSLKKLKDRDRAGETSVANLLAAIESRRTIPLDRFIYGLGIRHI
GEQTALVMARGYGSAAEFLSAMDKVAARDPEAIAELDALDQIGDAVIEAAAAFFAEDHNR
GMVQRLHDQLTVQDAEKPKTDTAVAGKTVVFTGALERMTRDEAKAQAEALGAKVSSSVSK
KTDLVVAGPGAGSKLKTATELGIQVMTEDEWLAMVSA
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atgatccccgtcgacgacctgaccgaagcccaagccgttgaagaactcacccggcttgcc
gatgagatcacgcggcatgacctggcctatcatcgcgacgacgccccgacgatcagcgac
gctgactacgacgccctcaagcggcgcaacctcgacatcgaggaccgttttccgcacctg
atccgtgagaattcgccgtccacgcgggtgggcgcgccgcgggccgagcagttttcgccg
gtgacgcacggcacgccgatgctcagcctcgacaacgccttctccgacgaggacgcgctg
gagttcgatgcgcggatccggcggttcctgaagcttgatgagacgccgatccgctacacg
gccgagcccaagatcgacgggctgtcggcttcgatccgctatgagaagggcgtcttggtc
cagggggccacgcgcggcgacgggcgggtcggcgaggacgtcacggccaacctgctgacc
atcagggacatcccgcacaagctggccgggtcgggctggcccgaggtgatcgaggtgcgg
ggcgaggtctatctgggccatgcagagtttgctgcgctcaacgccgccgccaccgaggcc
ggcgacaagacctacgccaacccgcgcaacgcggcggccggctcactgcgccagatcgac
agcacgatcacggccaggcggccgctgaagtttttcgcctacgcctggggcctgctcagc
gagaaattcgccgacagccagtgggaggcgctggagaagctcaagagctggggcttccag
accaccccgcagtcggtctgcgtcgagggcgccgaagggttgctggccgcctacgcggcc
atggaggcggcgcggccgaacctcggctacgacatcgatggcgtggtctacaaggtcgac
aacctcgactggcagcggcgcctgggcttcgtctcccgagccccgcgctggggcatcgcc
cgcaagttcccggccgagcaggcgcggacggtgctggaagccatcgacctgcaggtcggc
cgcaccggggcggtgacgccggtggcgcggctgaggcccgtgacggtcggcggcgtctcg
gtgaccaacgccaccctgcacaacgccgacgagatcgcccgcaaggacctgcgggtcggc
gacacggtgatcgtccagcgggccggcgacgtcatcccgcagatcgtcggagccatcctc
gaagcgcgcccggagggggccgagcccttcgccttcccggaccactgcccctgtcccctg
aagacgccgctggcccgcgagaccacggccagcggggccgagacggtggtgcggcgctgc
accggcgagctggcctgtccgttccagcggatcgagcacctgaagcacttcgtctcccga
cgggccttcgacatcgagggcctgggggagaagcagctgcagggcttcttcgacgacggg
atgatccgggaaccggccgacatcttcctgctggaagaacgggacaagacctccctcaag
aagctcaaggaccgcgatcgggccggggagaccagtgtcgccaacctgctggcggccatc
gagagccggcggaccattccgctggaccgcttcatctatgggctgggcatccgtcacatc
ggagaacagacggcgctggtcatggcccgcggctatggcagcgccgccgagttcctcagc
gccatggacaaggtggcggcccgcgacccggaggccatcgccgaactggatgcgctggac
cagatcggcgacgcggtcatcgaggcggcggcggccttcttcgccgaggatcacaaccgg
ggcatggtccagcggctgcatgaccagctgaccgtccaggacgcggagaagccgaagacc
gacacggcggtggccggcaagactgtggtcttcaccggcgcccttgaacggatgacccgc
gacgaggccaaggcccaggccgaggcgctcggggccaaggtctcgtcatcggtgtccaag
aagaccgacctcgtcgtcgccggacccggcgccggctccaagctgaagacggcgaccgag
ctgggcatccaggtgatgaccgaggacgagtggctggcgatggttagcgcgtaa
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