Phenylobacterium montanum: KCG34_04955
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Entry
KCG34_04955 CDS
T07744
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
caul
Phenylobacterium montanum
Pathway
caul03030
DNA replication
caul03410
Base excision repair
caul03420
Nucleotide excision repair
caul03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
caul00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KCG34_04955 (ligA)
03410 Base excision repair
KCG34_04955 (ligA)
03420 Nucleotide excision repair
KCG34_04955 (ligA)
03430 Mismatch repair
KCG34_04955 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
caul03032
]
KCG34_04955 (ligA)
03400 DNA repair and recombination proteins [BR:
caul03400
]
KCG34_04955 (ligA)
Enzymes [BR:
caul01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KCG34_04955 (ligA)
DNA replication proteins [BR:
caul03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KCG34_04955 (ligA)
DNA repair and recombination proteins [BR:
caul03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KCG34_04955 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KCG34_04955 (ligA)
MMR (mismatch excision repair)
DNA ligase
KCG34_04955 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KCG34_04955 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
BRCT
HHH_2
PTCB-BRCT
HHH_5
Bep_C_terminal
Motif
Other DBs
NCBI-ProteinID:
QUD89233
UniProt:
A0A975G171
LinkDB
All DBs
Position
complement(1084980..1087079)
Genome browser
AA seq
699 aa
AA seq
DB search
MPDLKQVEALDEAEAADELARLADELAGHDLRYFQEDAPAISDADYDAMKRRNADIEGRF
PHLVRDNSPSLRVGAARAEKFSPVEHGVPMLSLDNAFSNDEAIEFDARVRRFLRLGEEPV
FYTAEPKIDGLSASLRYENGVLVRGGTRGDGRVGEDVTENLRTIREIPQRLAGKGWPEVI
EVRGEVYLGHAEFAALNAAAEAAGTKTYANPRNAAAGSLRQIDANITAQRPLRFFAYAWG
LISAPFSDTQWGALEALRSWGFHVTPQARRVENAEGLLAAYAAMEVERPKLDFDIDGVVY
KVDRLDWQSRLGFVSRSPRWAIARKFPAQQARTILEAIDIQVGRTGAVTPVARLQPVTVG
GVVVENATLHNADEIARKDLHVGDTVIVQRAGDVIPQIVSVVLDERPEGAVPYEFPTHCP
CPLHTPLARETTSGGAETVVRRCTGEFACPFQRVEHLKHFVSRRAFDIEGLGDKQLQAFF
DEGLIREPADIFTLEARDAASLKKLKDREGFGETSVKNLFAAIEARRRIGLDRFIYGLGI
RHIGETTAVVLSRGYLTVDAFLAAMDKVADRDPEAIAELDALDQVGGAVIEAAAAYFAED
HNRRIVQNLVAQLQVLDAEKPKTDTAVAGKTVVFTGALEKLTRDEAKAQAEALGAKVASS
VSKKTDLVVAGPGAGSKLKTAAELGIQVLTEDEWLALIG
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atgcctgatttgaagcaggtcgaggccctggacgaggccgaggcggccgacgagctcgcc
cgcctggccgacgagctggccggtcacgacctccgctatttccaggaggacgcgcccgcc
atctcggatgcggactacgacgcgatgaagcggcgcaacgccgacatcgaggggcggttt
ccgcatctggtgcgcgacaattccccctctctgcgggtgggcgcggcgcgggcggagaag
ttctcccccgtcgagcatggcgtgcccatgttgtcgctggacaacgccttctccaacgac
gaggcgatcgagttcgacgcgcgggtgcgccgtttcctgcgcctgggcgaagagccggtg
ttctataccgccgagcccaagatcgacgggctgtcggcctccctgcgctatgagaacggg
gtgctggtgcgcggcgggacccgcggtgacggacgcgtgggcgaggacgtgaccgagaac
ctgcgcactatccgcgagatcccgcagcgcctggccggcaagggctggcccgaggtgatc
gaggttcgcggcgaggtctatctgggccatgccgagttcgccgcgctgaacgccgcggcg
gaggcggcgggaaccaagacctacgccaacccgagaaacgccgccgctggttcgctgcgc
cagatcgacgccaatatcaccgcccagcggcccctgcgcttcttcgcctatgcctggggg
ctgatcagcgcgccgttcagcgacacccaatggggcgcgctggaggctttgaggtcatgg
ggtttccatgtgacgccacaggcgcggcgggtggagaacgccgagggcctgctggccgcc
tatgcggcgatggaggtcgagcggcccaagctggacttcgatatcgacggggtggtctac
aaggtcgaccgactggactggcagagccggctgggcttcgtttcgcgcagcccgcgctgg
gcgatcgcccgcaagttccccgcccagcaggcgcgcaccatcctcgaggccatcgacatc
caggtcggccgcaccggcgcggtgacgccggtggcgcgcctgcagccggtgaccgtgggc
ggggtggtggtggagaacgccaccctgcacaacgcggacgagatcgcgcgcaaggacctg
cacgtcggcgacacggtgatcgtgcagcgcgccggcgatgtaatcccgcagatcgtcagc
gtggtgctcgatgagcgtcccgagggcgccgtcccctacgaattcccgacccattgcccg
tgcccgctgcacaccccgctggcgcgcgagaccaccagcggcggggccgagacggtggtg
cgtcgctgcaccggcgagttcgcctgtccgttccagcgggtcgagcacctgaagcacttc
gtctcccgccgcgccttcgacatcgagggcctgggcgacaagcagctgcaggcgtttttc
gacgaaggcctgatcagggagccggccgatatcttcaccctggaggcgcgtgacgccgcc
tcgctgaagaagctgaaggaccgggagggtttcggcgagaccagtgtgaagaacctgttc
gccgccatcgaggcgcggcggcggatcgggctggaccggttcatctatggcctgggcatc
cgccacatcggcgagaccaccgccgtcgtgctcagccgcggctatctaaccgtcgacgcc
ttcctggccgccatggacaaggtcgccgatcgcgatcccgaggcgatcgccgagctggac
gccctggatcaggtcggcggcgcggtgatcgaggcggcggcggcctatttcgccgaggac
cacaatcgccgcatcgtgcagaacctggtggcccagcttcaggtgctggacgcggaaaag
cccaagaccgacacggcggtggccggcaagacggtggtgttcaccggcgccctggagaag
ctgacccgcgacgaggccaaggcccaggctgaggccctgggggccaaggttgcgtcctcg
gtctcgaagaagaccgacctggtggtggccgggccgggggcgggctcgaagctgaagacc
gcggccgaactcggcatccaggtgctgaccgaggacgagtggctggccctgatcgggtga
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