Clostridium felsineum DSM 793: CLAUR_041420
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Entry
CLAUR_041420 CDS
T08241
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
caun
Clostridium felsineum DSM 793
Pathway
caun03030
DNA replication
caun03410
Base excision repair
caun03420
Nucleotide excision repair
caun03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
caun00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CLAUR_041420 (ligA)
03410 Base excision repair
CLAUR_041420 (ligA)
03420 Nucleotide excision repair
CLAUR_041420 (ligA)
03430 Mismatch repair
CLAUR_041420 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
caun03032
]
CLAUR_041420 (ligA)
03400 DNA repair and recombination proteins [BR:
caun03400
]
CLAUR_041420 (ligA)
Enzymes [BR:
caun01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CLAUR_041420 (ligA)
DNA replication proteins [BR:
caun03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CLAUR_041420 (ligA)
DNA repair and recombination proteins [BR:
caun03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CLAUR_041420 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CLAUR_041420 (ligA)
MMR (mismatch excision repair)
DNA ligase
CLAUR_041420 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CLAUR_041420 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
PTCB-BRCT
HHH
Nlig-Ia
5_3_exonuc
DNA_ligase_ZBD
BRCT_2
HHH_3
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
URZ04076
LinkDB
All DBs
Position
4538827..4540833
Genome browser
AA seq
668 aa
AA seq
DB search
MNEKSIDISRMQELIEELNKYSYSYYVLDDPIIADKEYDKKYDELVKLEEKTGITYPYSP
TNRVGDIVLKQFEKYTHKGRLWSLDKAQSIEEIIDWHNRNKKAFNEYNSTHEDKLPELKY
VLTKKFDGLTINCTYDESGVMIKAATRGTGSIGEDITSQAKTIKSIPLKIENGAVIEVHG
EAIMTKGAFENYNKNAEVPLKNLRNGAAGALRNLNVRETARRNLSAFFYDVGYNEGEGFK
SYIEMMNFIKDMGFPVDEYISECSDIEEIKKEIEYVGSIRSSLDYDIDGVVIVIDDFKTR
DYLGYTVKFPKWAIAYKFEAEEATTKLIDVEWNVGRSGRVSPTAILEPVELAGVMVKRAT
LNNMDDIKRKKVKKGARVFVRRSNDVIPEIMGIVESEEVTEEIEAPTICPSCGSEIVKEG
VHLFCENTLSCKPQMVKSIVHFASREAMNIEGFSEKTAEQLFEKLNIKSISDLYRIKKEE
LLSLDKFKDKKASNLINAIEKSKECDLASFIYSLGIPNVGKKTATDLCKQFKSFENIKKA
SYDELILVQDIGSIVAESIVEFFKQEKIEKSLNELFELGVKPFYEESEVSESVFNGKTVV
ATGSLENYSRTEIKEKLESLGAKVAGSVSKKTDYVIAGENAGSKYDKAVTLGVKILTEEE
FEELINNM
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaaaaaagtatagatatttcaagaatgcaggaacttatagaagaattaaataaa
tattcatatagctattatgtacttgatgatccaattatagctgataaggaatacgataaa
aagtatgatgaacttgtaaagctagaggagaaaacaggaattacttatccatattcacct
accaatagggttggtgatatagttttaaaacagtttgaaaagtatacacataaaggcaga
ctttggagtcttgataaggcgcaaagtattgaagaaatcattgattggcataataggaat
aaaaaagccttcaatgaatataatagtactcatgaggataagcttccggagcttaaatat
gttttgactaaaaagtttgatggacttactataaactgcacttatgatgaaagtggcgtt
atgataaaggctgcgacacgtggaactggatctataggtgaggacataactagtcaagct
aaaactataaaatccataccacttaaaatagaaaatggagcagttattgaagtgcacgga
gaagcaataatgactaaaggtgctttcgaaaattacaataaaaatgcagaagtacccctc
aaaaacttaagaaatggtgcagcaggagcactaaggaatttaaatgtacgtgaaactgca
cgaagaaatttatcagcctttttttatgatgttggatacaatgaaggtgaaggttttaaa
tcctatatagaaatgatgaattttataaaagacatgggatttccagttgatgagtacata
agtgagtgcagtgatattgaagaaataaaaaaggaaattgaatatgtaggaagcataaga
agtagcttggattatgatatagatggtgttgttattgtaatcgatgattttaagacaaga
gactatcttggatatactgtgaaatttcctaagtgggcaatagcttataaatttgaagca
gaagaagcgactacaaagctaatagatgtggaatggaatgttggaagaagtggaagagtt
agtcctacagctattctagaacctgtagaattagcaggagtaatggttaagagagctact
ttaaataatatggatgacataaaaagaaaaaaggttaaaaaaggggctagagtatttgta
agaagatctaatgatgtaatacctgagattatgggaatagtagaaagtgaagaggttacg
gaagaaatagaagcaccaacaatatgtccatcctgcggtagtgaaattgtaaaagagggt
gtacatttattttgtgagaataccttgtcttgcaaacctcaaatggttaagagtatagtt
cattttgcaagtagagaagctatgaacatagaaggttttagtgaaaaaaccgcagagcag
ttgtttgaaaagctaaatataaaaagtatatccgatttatataggataaaaaaagaagaa
ctgctgtcactcgataaatttaaagataaaaaggcaagcaatcttataaatgctatagag
aaaagtaaagaatgtgatcttgcttcctttatatattcattaggtataccaaatgtaggt
aaaaaaacagcaacggatttatgtaagcaatttaaaagttttgaaaatataaagaaagct
tcttatgatgaacttattttagttcaagatataggttctattgtggcagaaagtattgtt
gaattttttaagcaagaaaagatagaaaaaagtcttaatgaattatttgaacttggagta
aagccattctatgaggaaagtgaagtttccgaaagtgtatttaatggtaaaactgtagtt
gcaacaggaagtcttgagaattatagtagaacagagataaaggaaaagttggaaagtctt
ggtgctaaggttgctggaagtgttagtaaaaaaactgattatgtaatagcaggtgaaaat
gcaggatctaagtatgataaagctgtaacacttggagttaaaatattaactgaagaagag
tttgaagaattaataaataatatgtaa
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