Corynebacterium auriscanis: CAURIC_07130
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Entry
CAURIC_07130 CDS
T09334
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
caus
Corynebacterium auriscanis
Pathway
caus03030
DNA replication
caus03410
Base excision repair
caus03420
Nucleotide excision repair
caus03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
caus00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CAURIC_07130 (ligA)
03410 Base excision repair
CAURIC_07130 (ligA)
03420 Nucleotide excision repair
CAURIC_07130 (ligA)
03430 Mismatch repair
CAURIC_07130 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
caus03032
]
CAURIC_07130 (ligA)
03400 DNA repair and recombination proteins [BR:
caus03400
]
CAURIC_07130 (ligA)
Enzymes [BR:
caus01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CAURIC_07130 (ligA)
DNA replication proteins [BR:
caus03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CAURIC_07130 (ligA)
DNA repair and recombination proteins [BR:
caus03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CAURIC_07130 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CAURIC_07130 (ligA)
MMR (mismatch excision repair)
DNA ligase
CAURIC_07130 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CAURIC_07130 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
MutL
Auto_anti-p27
BRCT_2
HHH
Motif
Other DBs
NCBI-ProteinID:
WJY73045
LinkDB
All DBs
Position
1639977..1642022
Genome browser
AA seq
681 aa
AA seq
DB search
MTTQPELTEQWRQLAEQVRTHRERYYYGDPTISDEEFDTLLAQLKELERAHPEAVTGTSP
TQEVAPAPPSAFNNVDHRERMLSLDNVFNAGDLEAWLTRTPAETYLTELKIDGASINLLY
IDGKLELALTRGDGTTGEDITHNARTLDDIPDTLTGTEEFPVPELVEIRGEVFIQVEDFA
TMNAQRQAEGLKLFANPRNAAAGAMRQKNAADTAKRPLRLICHGIGAREGFNVSSQHEAY
RAIEAWGLPVSPYTKQLHSPKQVLKEVAYWGDHRHDAAHEMDGLVVKVDSLDEQLSLGTT
SRAPRWAIAYKYPPEEAMTRLRNIRIGIGRTGRATPYAVMEPKYVAGSTVTMATLHNPTE
AHRKGVLLGDTIMIRKAGEVIPEVLGPVEDLRDGTQREYLFSSVCPECGTPLAPSKEGDA
DWRCPNTRSCPGQLHTRLTYLAGRGAFDIDALGERAAYDLINSGVLPDESELFDLGEEDL
KKTTAYSTKAGVLNKAGETLLEKLEGAKQVELWRVIVALSIRHAGPTAAKALAAHYHSIP
AISGASVAEMSTIDGVGEIIAKSVADWFTVAWHRNIVDKWAAAGVTMEEQAPEQTEEDLA
QSSLLEGLTIVVTGTLENFDRDSAKQAIESRGAKAAGSVSKKTSYLVAGEKAGSKLTKAE
DLGVPILNEAQFMKLLDDGSV
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
gtgaccacacagccagaactaacggagcagtggcgccagttggcagagcaggtgcgtacg
caccgcgaacgctattactacggcgatcctacgatcagcgatgaggagttcgacacgctc
ctcgcacagctcaaggagctcgaaagggcgcaccctgaagctgtcaccgggaccagcccc
acccaggaagtcgccccagccccgccgagtgcattcaacaacgtggaccaccgcgagagg
atgctgtccttggacaatgtcttcaatgctggcgacttagaggcgtggctgacgcgcacc
ccggcggagacttacctcacggaactgaagattgatggcgcatcgatcaacctgctgtat
atcgacgggaagctggaactggcccttacacgtggcgatggcaccaccggtgaggacatt
actcacaatgcacgcaccctcgatgacatcccggataccctcacgggcaccgaggagttt
cccgttccggagctcgtagagatccgcggtgaggtgttcatccaagttgaggacttcgca
acaatgaacgcccaacggcaggcggaagggctgaagctgttcgctaatcctcgtaacgct
gctgctggtgcgatgcgtcagaaaaacgcagcagacacagcaaagcgcccacttcgcctg
atctgccacggcatcggggctcgggagggctttaatgtctccagccaacacgaggcctac
cgtgcgatcgaggcgtggggcctgcccgtcagcccgtacactaagcagttgcactccccc
aagcaagtcctcaaggaagttgcgtattggggggatcatcgccacgatgcagcacacgag
atggacggccttgtagttaaagtcgattccctcgatgaacaactcagcttaggtaccacc
agccgcgccccgcgctgggccatcgcatataagtatccgcccgaagaagccatgacgcgc
ctgcgcaacatccgcatcggcatcggtcgcacgggccgcgccactccgtatgccgtgatg
gagccgaagtatgtggcagggtccaccgtcaccatggccacgttgcacaatcccacggaa
gctcaccgcaaaggtgtgctactgggagataccatcatgatccgcaaagccggtgaggtc
atcccagaggttttgggaccggtcgaggatctacgcgatggaacacagcgggaatacctc
ttctcaagcgtgtgcccagaatgtggcacccccctggctccatctaaggagggcgacgcc
gattggcgctgccccaatacccgcagctgccccggccaactacacacgcgcctcacgtac
ttggcggggcgcggggcattcgatattgatgcgttaggcgagcgcgccgcctatgacctc
attaactcgggcgtgctgccagatgaatcagagttgttcgaccttggtgaggaggatctg
aagaagaccactgcctattccaccaaggcgggggtgctcaacaaggccggtgaaacactg
ctggagaagctagaaggcgccaagcaggtagaactatggcgcgtgatcgttgctttgtct
atacgccatgctggcccaactgccgcaaaagctttagctgcgcactaccacagcatcccc
gcaatcagcggggcgagcgtggcagagatgtccaccatcgatggggttggggaaatcatc
gccaaatccgtcgctgattggttcaccgttgcatggcaccgcaatattgtcgacaagtgg
gcggcagcgggtgtgacgatggaagaacaagcccctgaacaaaccgaggaggatctggcc
caatcgtcccttctggaaggcctgaccattgtggtgacgggcacgttggaaaacttcgat
cgcgatagcgcaaaacaagctattgaatcccgtggcgccaaggcggcaggcagcgtatcg
aagaagaccagctacctggtcgcgggtgaaaaggccgggtccaagctcaccaaggccgag
gatctgggtgtgcccatcctgaacgaggcacagtttatgaagctgttggatgacggttcg
gtgtag
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integrated database retrieval system
