Corylus avellana (European hazelnut): 132170313
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Entry
132170313 CDS
T09426
Name
(RefSeq) 5'-3' exoribonuclease 4
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
cave
Corylus avellana (European hazelnut)
Pathway
cave04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
cave00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
132170313
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cave03019
]
132170313
Messenger RNA biogenesis [BR:
cave03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
132170313
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
132170313
NCBI-ProteinID:
XP_059437224
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All DBs
Position
ca2:7137855..7153295
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AA seq
962 aa
AA seq
DB search
MGVPSFYRWLADRYPQSIVDVVEEEPRGENGVVDVSKPNPNGMEFDNMYLDMNGIIHPCF
HPEGKPPPTTYDDVFKSIFDYTDHLFSLVRPRKLLYMAIDGVAPRAKMNQQRSRRYRAAK
DASEAEAEEERLRKEYEAVGRNLTPKEKPETSDSNVITPGTQFMVALSVALQYYIHSRLN
HNPGWRYTKVILSDSNVPGEGEHKIMSYIRLQRNLPGFNPNTRHCLYGLDADLIMLSLAT
HEVHFSILREVVTLPGHQEKCFLCGQVGHLAAECRGRQGGGDQNAVDDTPIHKRKYQFIN
LWVLREYLQYDLEIPNPPFEIDFERILDDFVFLCFFVGNDFLPHMPTLEIREGAINLLMH
IYRSEFAAMGGYLTDAGEVMLDKVEHFIQSVAVNEDQIFQKRTRIQQAFERRESSEELEA
PVVDKVKLGEPGYKERYYAEKFNVSDLEEIEKVKRDVVWKYVEGLCWVCHYYYQGVRSWQ
WFYPYHYAPFASDLKDLVELEITFFLGEPFKPFDQLMGTLPAASSSALPEKYKKLMTDLS
SPILKFYPSDFEVDMNGKRFAWQGVVKLPFIDEKKLIAATKKLEETLTEEEQVRNSVMFD
LLYVHRAHPLAQHVFYYYTICSHLPPHQKFVWPIDINASGGMNGFLWLCERNGMSNVVRS
PVSGLQDVDNNTVINVTYLLPSPHKHIPELPKGVVIPKKILTPIDIKPSPGLWHEDNGFR
RHQGRERPQVPGAIAGPLLGEAAHRLVKNTLNIKTNNSSSGSFEQSSRQNFPGNYTVNRQ
RPAGPSGYQRGFTGDPNFYPGQYNNFPGMMARPRLHLVSNGMQGDRQNLRTQDRSQHLED
FHALTIEGSARTRPPTVMSSPMMSIGMPNLGHATDPPNKFVQNMGTPPTPPHKWINRAPA
ANGGMYNRQQETASSGIYEKQVQVKKVYQVKTRSPNDISDSGNHSQDIGIHFQDMPPSGN
LQ
NT seq
2889 nt
NT seq
+upstream
nt +downstream
nt
atgggcgtgccttcgttttatcggtggctggccgacaggtacccgcagtcgatcgtggac
gtggtggaggaggagccgcgcggcgagaacggtgtggtcgacgtgtcgaagccgaaccct
aatggcatggagttcgacaacatgtacttagacatgaatgggatcatccacccttgcttt
caccccgagggcaagcctccgcctaccacctatgatgatgtattcaaatcaatatttgat
tacactgaccatctattctcattagttcgtccaaggaagcttctttatatggcaattgat
ggagttgcaccaagagctaaaatgaatcaacaacgttctcggcgctacagagctgcaaaa
gatgcatctgaggcagaagctgaagaggaaaggttgaggaaagaatatgaggccgtgggg
agaaatttgacccctaaagaaaagcctgaaacttctgattcaaatgtcattactcccgga
actcagtttatggtggcgctttcagtagcgcttcagtactatatacattctaggttgaac
cacaacccaggctggcggtatacaaaggttattctttctgattcaaacgtgccgggcgag
ggtgaacacaaaatcatgtcatacattcgattgcaacgtaaccttcctggtttcaaccca
aacactcggcattgtctatatggtctggatgcagatctgattatgctatctttagctaca
catgaggttcacttttctatattaagagaggtagttacactgcccgggcatcaggagaag
tgttttctctgtggccaagttggtcatctggcagctgaatgtcgtggtaggcaaggtggt
ggggatcagaatgcagtagatgacacaccaattcacaaaaggaaatatcagttcatcaat
ctctgggtgttgcgagaatatctgcaatatgatttggagattcccaaccctccatttgag
attgactttgaacgaatactagatgattttgtatttctgtgttttttcgttggcaatgac
tttcttccacatatgccaacattggagatcagggagggtgctataaatttactgatgcat
atttatagaagtgagtttgctgcaatgggtggttatcttactgatgcgggtgaggttatg
ttagataaagtagaacattttatccagtctgttgctgttaatgaagatcaaatctttcag
aagcggactcgaattcagcaggcttttgaaagaagagagtcttctgaagagctagaggca
ccagtggtagacaaggtcaagctaggggagcctggatacaaagagaggtattatgccgag
aaatttaatgtatcagatctggaggagattgagaaagttaaaagagatgtagtttggaag
tatgtggaaggtttatgttgggtctgccactattactaccaaggcgttcgctcctggcaa
tggttttatccataccattatgctccttttgcttctgatcttaaagatcttgttgaattg
gaaataacttttttcttgggggagccatttaaaccctttgatcaactcatgggaactctg
ccagctgcaagttcaagtgctctgccggaaaaatacaaaaagttgatgactgacctgtca
tcacctatccttaaattctatccttctgattttgaggttgacatgaatggcaagcgcttt
gcatggcagggtgttgtcaagttgccattcatcgatgagaagaagttgatcgctgcgaca
aagaaacttgaagaaactttaacggaggaagagcaggttcggaatagcgtgatgtttgat
ttgctttatgtacatcgtgctcatcctttggctcaacatgttttttattattatacaata
tgttcgcatttacccccacaccagaaatttgtttggccaattgacataaatgctagtggt
ggaatgaatggattcctttggttatgtgagagaaatggaatgagcaatgtagttcgttcc
cctgtcagtggattgcaagacgttgataataacacagtcatcaatgtaacatatcttttg
cctagcccccataaacacattccagaacttccgaagggtgtagtcatacccaaaaagatt
ttaacacctatcgatattaaaccgtcccctgggttatggcatgaagacaatggtttccgg
cggcaccaaggcagagaaaggccgcaagtccctggagcaatagcaggtccattactagga
gaagccgctcatcgccttgtaaagaacacacttaacataaaaactaacaattcatcctct
ggatcttttgagcaatcgtcacgtcaaaacttcccaggcaactatacagtcaacagacag
aggccggctggaccctctgggtaccaaaggggctttactggagacccaaatttttaccct
ggacagtacaataattttccagggatgatggctaggcctaggcttcacctcgtatcaaat
ggcatgcaaggcgatagacagaatcttaggacacaagatagatcacaacatctagaagac
ttccacgccttgacaatagaaggaagtgcgagaactagaccaccaacagtgatgtcatct
ccaatgatgtcaattggtatgccaaatttaggacacgccacagacccacctaacaagttt
gtgcagaacatggggactcctccaacaccgccccacaagtggatcaatagagcaccagct
gcaaatggtggaatgtataacagacaacaagaaactgcatcttctggaatatatgagaag
caggtgcaggtgaagaaggtttatcaggttaaaactcgcagccccaatgatatttcagat
tctggaaatcattcccaggatattggaatccatttccaggatatgccaccttctggaaac
ctgcagtga
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