KEGG   Corylus avellana (European hazelnut): 132174963
Entry
132174963         CDS       T09426                                 
Name
(RefSeq) DNA-directed RNA polymerase IV subunit 1 isoform X1
  KO
K16250  DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6]
Organism
cave  Corylus avellana (European hazelnut)
Pathway
cave03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:cave00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    132174963
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cave03021]
    132174963
Enzymes [BR:cave01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     132174963
Transcription machinery [BR:cave03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     132174963
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_3 RNA_pol_Rpb1_5 RNA_pol_Rpb1_1 RNA_pol_Rpb1_4
Other DBs
NCBI-GeneID: 132174963
NCBI-ProteinID: XP_059442723
LinkDB
Position
ca3:28598578..28618485
AA seq 1474 aa
MDYDLHEEQQVPPGLLTGISFNFSTQTDIEKISVIAIDAVSEVTDPKLGLPNPSSQCSTC
GAHDLKYCEGHFGVIKFPFTILHPYYLSEVVKILNRICPGCKSVRQEVKVKGGNSVSSHP
QPKSCKYCTGKSIEWYPTVKFKVSSTELFRNSAIIAEVNEKLPKKFQKKNFRGLPADFWD
FIPKDEQQEESCLKPNRRVLSHAQVHYLLDDIDPKLIKKFVLRTDSLFLNCFPVTPNCHR
VTEVTHAFSNGQRLIFDERTRAYKKLVDFRGIANELGSRALDCLKISKLSSDVSSNKDLV
YGQQTKGADPSHSSGLRWMKDVVLGKRSDHCFRMVVVGDPHIKLSEIGIPCHVAERLHIS
ERLNRWNFDKLSDCCRLCFIEKGEVYVRRKGILVRVRRITELQIGDTIYRPLNDGDIVLI
NRPPSIHKHSLIALCVKILPVTSVLSINPLCCSPFRGDFDGDCLHGYVPQSIDARVELSE
LVGLDKQLINGQSGRNLLSLSHDSLTAAHLVMEDGVLLNLFQMQQLQMFCPHQLLSPAVV
KVPSLNSFVWTGKQLFSMLLPQGFDYVFPSNGVYISNGELLSSEGSFWLRDNNSNLFQSL
VKHCQGKVLDFLYTAQEVLCEWLSMRGLSVSLLDLYLSSDSCSWKNMMDEIRCGLQEADQ
TCNFKQLMLDSCRDFLVEGGEENAVVLDVERLCFEKQKSAALSQASVDAFKQVFRDIQNL
VYKYAGKDNSLLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSFRIPHQLSCAAWNNQKE
LGSVQKVDDTPEHTRSYIPYAVVENSFITGLNPLECFVHSVTSRDSSFSDNADLPGTLNR
RLMFLMRDLYTAYDGTVRNAYGNQLIQFSYDSKKDASTPNSSTDDLFGGSVDAHDGIGGQ
PVGSFSASAISEAAYSALDQPISLLETSPLLNLKNVLESGSKKRKTDRTMSIFLSKKLGR
RRHGLEYGALEVKNHLERLIFSDIVSTVMIIFSPQTCSKMHFSPWVCHFHICKEIVRRRG
LKVHSVINSLYRRCNSSRTESKLNLSKAQITSKCCSVAETQKGNNDTFCVNVTIAEISKN
SSLQLDTVRQSVIPFLLGAVVKGYPEIKKVDILWHDLPNLSSCRHSSCGELYLRVSMSGD
SYRTNLWSLLKNDCLQIMDMIDWSRSHPDNVHDFCLAYGIDAGWKYFLNRLESAISDTGK
SILPRHLLLVADSLSATGEFVGLNAKGIAQHREHASVSSPFMQACFSSPGACFIKAAKAG
VVDDLKGNLDALAWGKVIPTGTGGHFDIIYSGKGNEVLKPVDVYNLWGSKIISDEQNIQI
KMPVIHKSMSDKCDAQFAYKHGDLVPKGLKKSEISKTLLRSFLTANDILNWAHGLRVLLH
KYPINHSLDEKDKSALMRALYFHPRRDEKIGSGAQDIKIGCHHKHQNTRCFEVVRMDGTV
EDFSYHKCVLAALEIVDPRRAKIYKSKWLQRSTA
NT seq 4425 nt   +upstreamnt  +downstreamnt
atggactatgacttgcatgaagagcaacaagtgccacctggtctgctcactggcataagt
tttaatttttctactcagacagatatagagaagatatctgttatagcgattgatgcagtc
agtgaggtcactgatcctaagttgggactcccaaatccctcttcacaatgctccacatgt
ggtgcccatgatttaaaatactgcgaaggtcattttggggttatcaaatttccattcacc
atactccatccttattatttatcggaagttgtaaagattttgaacagaatttgccccgga
tgtaaatctgtcaggcaagaagtaaaggtcaagggtgggaattcagtatctagccatcct
caacctaagagttgcaaatattgtactggaaagtcaatagagtggtatccaacagtgaag
tttaaagtttcctctacggaactctttagaaatagtgcaattatagcagaggtaaacgaa
aagttgccaaagaagtttcaaaagaaaaattttaggggcttgcctgctgatttttgggat
tttattccaaaagatgaacaacaagaagaaagttgtttgaaaccaaacagaagggttcta
tcacatgcccaggtccattatttgttggatgatatcgatccaaagctgatcaagaagttt
gttttgaggacagattcactttttctcaactgtttcccagttacaccgaattgtcatcgt
gtgactgaagttacacatgcattttctaatggacagcgattgatctttgatgaacggacc
agggcctacaagaagttggttgattttagggggatagctaatgagctaggttctcgtgcc
ctggactgcctgaaaatttcgaagttaagctcagatgtgtcttcaaataaagatttggta
tatggccagcaaacaaaaggggcagatccctcacactcttctgggttgagatggatgaaa
gatgttgtacttgggaagcggagtgatcattgtttccgcatggtggttgttggtgatcca
catatcaagctcagtgaaattggtataccatgtcatgttgctgagaggttgcatatttct
gagcgtttgaacaggtggaactttgataagttaagtgattgttgtagattatgtttcatt
gagaagggagaggtttatgttcgtagaaaaggtattctggttcgtgtgcgtcgtatcact
gagctccaaattggggacactatatataggcctttgaatgatggggatattgtgttgata
aacagacctccttctatacataaacactcccttatagctctatgtgttaagatcctacca
gtaacttcagttctttctataaacccactttgctgttctccttttcgtggggattttgat
ggtgattgtcttcatggctatgttcctcaatcaattgatgccagagttgaacttagtgag
cttgttggtttagataaacaattaattaatgggcagagtggtaggaaccttctttcactt
agtcatgatagtttaactgctgctcatttggtcatggaggatggtgttctcttgaacctt
ttccaaatgcagcagctgcaaatgttttgcccgcatcaacttttgtcaccagcagttgtc
aaagttccctcacttaatagttttgtttggactggcaagcaactattcagcatgcttctg
cctcaagggtttgattatgtttttccttcaaatggtgtttacattagtaatggagagctt
ttgtcttctgaaggatctttttggttgcgtgacaataatagtaacctttttcaaagtctg
gtcaaacattgccagggtaaggtacttgacttcttgtatactgctcaggaagttctctgt
gagtggttgtcaatgaggggcttgagtgtttcacttttggacttatacctctcctctgac
tcatgctcgtggaaaaacatgatggatgaaatccgttgtgggttacaagaagcagatcag
acgtgtaatttcaaacagttgatgttggattcttgtcgtgattttctcgtcgaaggtggc
gaagagaatgctgtggttcttgatgtggagcgtttgtgctttgagaagcaaaaatctgct
gcgctcagtcaagcttctgttgatgctttcaagcaagtatttcgggatatccaaaattta
gtctacaagtatgcaggtaaggacaactccttgttgactatgtttaaggctggaagcaag
ggtaatttgctgaaattggtccagcatagcatgtgtcttggcttgcaacattcactggtt
cgactatcatttagaattccccaccagctctcatgtgctgcttggaataatcagaaggaa
cttggttcagtccagaaggttgatgacactcctgaacatactcggtcttacattccatat
gctgttgttgagaattcttttataactggtttgaatcctctagaatgttttgttcattca
gtcacaagtcgagatagttcttttagtgacaatgctgatctacctgggactttgaaccgt
cgtcttatgttcttaatgcgtgatttgtacacagcatatgatggaacagtgagaaatgca
tatggtaatcaacttattcagttctcttatgatagtaagaaggatgcatctactccaaac
agcagcactgacgacttgtttggtgggagcgttgatgctcatgatgggataggtggccag
cctgttggttcattttcagcttctgccatttcagaagccgcatacagtgctttggaccaa
ccaattagcctacttgaaacttctccactgttgaatctgaagaatgttctggagtctggt
tcgaaaaaacgtaagacggacagaactatgtcaatttttttgtccaagaaacttggaaga
cggaggcatgggctcgagtatggagccttagaagttaagaatcatttggagagactaata
ttttcagacattgtgtctactgtcatgataatcttttccccacagacttgtagcaagatg
catttcagtccttgggtttgccattttcatatatgcaaggaaattgtgaggagaagagga
ctaaaggtgcattcagtcatcaattccctctacaggaggtgtaactcttccagaacagag
tcaaaattgaatctttccaaagcgcaaataacaagcaagtgttgttctgtagctgaaaca
cagaagggaaataatgatacattttgcgtcaatgtcacaatagctgagatctccaagaat
tcttctttacaattggatacagttcgacagtcagtcatacctttccttcttggagctgtt
gttaaaggttaccctgagatcaagaaggtggatattttgtggcatgatctgcctaatcta
tcaagttgtcgtcatagttcttgtggtgaactatacttgagggtttctatgtcaggagac
tcttatagaacaaatctctggagtttgcttaagaatgactgtctacaaataatggatatg
atcgattggtcaagaagtcatccagataatgttcatgatttctgtttggcctatggaata
gatgctggatggaaatattttctcaataggctggaatctgcaatatctgatactggcaag
tctatacttcctcggcatttgctgcttgttgctgatagtctatcagctacaggagagttt
gttggcttgaatgcaaaaggcattgcacaacatagagaacatgcatctgtctcgtcaccc
tttatgcaagcgtgtttctctagccctggtgcgtgctttattaaagctgctaaggctggt
gttgtggatgatcttaagggtaaccttgatgcattggcatggggaaaggttattcctaca
gggactggtggtcactttgatattatatattctgggaaggggaatgaggttttgaagcct
gtagatgtttataatctttggggcagcaaaattatttctgatgaacagaatatacagatc
aaaatgcctgttatacacaaaagtatgtctgacaaatgtgatgctcaatttgcctacaag
catggcgatcttgtaccaaaaggacttaaaaagtcagaaatatcaaaaacactcttaaga
agttttttgacagcaaatgatattctgaattgggcccatggattgagggttctactgcac
aagtatcccatcaatcacagtttagatgaaaaagacaagtcagctttgatgagggcttta
tattttcatcctcgaagggacgaaaagattggaagtggagctcaggacataaagattggg
tgccaccataagcatcagaatacgcggtgctttgaagtggtacggatggacgggacagtt
gaagatttttcgtaccacaagtgtgtgcttgctgctcttgagatcgttgatccccgaagg
gccaaaatctacaaatcaaaatggttacaacgcagtactgcatag

DBGET integrated database retrieval system