Corylus avellana (European hazelnut): 132190024
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Entry
132190024 CDS
T09426
Name
(RefSeq) DNA ligase 4-like isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
cave
Corylus avellana (European hazelnut)
Pathway
cave03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cave00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
132190024
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cave03400
]
132190024
Enzymes [BR:
cave01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
132190024
DNA repair and recombination proteins [BR:
cave03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
132190024
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT_2
BRCT
DNA_ligase_A_C
DNA_ligase_A_M
PTCB-BRCT
DNA_ligase_IV
Motif
Other DBs
NCBI-GeneID:
132190024
NCBI-ProteinID:
XP_059460883
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All DBs
Position
ca8:16345442..16371637
Genome browser
AA seq
834 aa
AA seq
DB search
MAEKDLDECPCKLENETCNVIHQSLKERHELLRKVLKPLKGRLEILVPNGGLGLNSHCPS
GEPCWSHIAHNVDDVERFFKETVENRDEGIVLKDLGSKWEPSDRSGKWLKLKPDYIRAGS
DLDVLIIGGYYGSGRRGGEVAQFLVGLAERPAPNTYPRRFLSFCRVGTGLSDEELDAVAT
KLKPFFRKYEYPRKPPPSFYQVTNNSKERPDVWVDSPEKSIILSITSDIRTIRSEVFAAP
YSLRFPRIDRVRYDKPWHECLDVQSFVELVHSSNGTTQRGTDYGGLQESRPKRMKFSKGE
RKNLSVVPSHLIQTDISDVMGGSSIFSNMMFYFVNFPPTLSLDSLHKMVAENGGTFSMNL
NNSVTHCVAADSKGIKYQAAKLHGDIIHYSWVLDCCSQKKLLHLQPKYFLFLSGSSKKKL
QEEIDEFSDSYYQDLDLAGIKQLLSNVDRYEATKTIDYYKKKYCPKKKWSHFYGCCIYFR
PSIPSLKPDWEVLLGLALRRLKLEVSMAGGKVSHSIALATHLVVLSVPGFDVDFETLLKS
FTSSEKHLLWNKGLHVVKSQWLEDCLERDQRLQEGPYSLKTIGVQDLEIVECNHDKHDQD
LGAPAGLDNEEKQNMSPSLDLREQITDKTALGKPKTLASYEGIGKRKRGRPAGTIMNKGK
TTMTQARRTRGRIGQRPAKICDNESDESLSHDEKTHREENNIREGNHETVGTGSSEIQGT
EIIEDSESSARGKAAEEVEKDIGYEEWHDKVPNVEMTKMHINSKDGERLEKLEVMADPVQ
AMLLDMIPSLGAKEVGTRERILNDEKPPLDPNAGPTKKKKVSYKDVAGELLKDW
NT seq
2505 nt
NT seq
+upstream
nt +downstream
nt
atggcagaaaaagatttagacgagtgtccctgcaaattggaaaatgaaacttgcaatgta
attcaccaaagcttgaaggagcgccatgagcttttgcggaaagttttgaagcctttgaag
ggtcgtttggaaatcttagtacctaatggtggtcttggtctaaatagtcactgcccttct
ggggaaccttgttggtcacatattgctcataatgtggatgatgttgaaaggttcttcaaa
gaaaccgttgagaatagagatgaagggattgtgttaaaggaccttggttccaaatgggaa
cctagtgatcggagtggaaagtggttgaagttgaagcctgactatattcgtgctggttct
gatctggatgttcttatcatagggggatactatggctctggtcgtcgtggtggtgaggta
gctcaattcctggtcggccttgcagagcgtccagccccaaatacataccctaggcgattt
ctttccttctgcagagtgggtactgggctttcagatgaagagctggatgctgttgcaacc
aaattgaagcctttttttaggaaatatgaatacccaaggaagccaccaccaagtttttat
caagtaacgaataactcgaaagaaagaccagatgtttgggttgacagccctgagaaatca
ataattctgtctattaccagtgatatccgaaccataagatctgaggtatttgctgcaccg
tatagcctgagatttccacgtattgaccgagtgagatatgacaagccttggcatgaatgc
ctcgatgtgcaatcttttgtagaacttgtacattcaagcaatggtactacacaaaggggc
acagattatggtggccttcaggaaagtagaccaaaacgcatgaaattctctaagggagag
agaaagaacctctctgtcgttccttctcatttaattcagactgatatttctgacgttatg
gggggctcctcaatattttcaaatatgatgttttacttcgttaattttccaccaaccctg
tctcttgattccttgcacaaaatggttgctgagaatggagggactttctcaatgaatttg
aataactcagttactcattgtgttgcagctgatagcaaggggatcaagtatcaggctgca
aaacttcatggagatattattcattactcttgggtattggattgttgctcacaaaagaag
ctcctccatttacagccaaagtacttcctcttcctttctggctcatcaaagaagaagtta
caagaagaaattgatgaattttctgactcatactaccaggatcttgatcttgcaggcatc
aaacagctcttaagtaatgtggacagatatgaggcgacgaaaactatcgactattataag
aaaaagtactgtccaaagaagaaatggtcccacttttatggctgctgcatttatttccgc
ccttcaataccatctttgaaaccagattgggaagttttgttgggacttgcattgaggagg
ttgaagcttgaagtttccatggctggtggaaaagtcagccacagtattgctcttgctacc
catttggtagttttgtcagtaccaggttttgacgtagactttgaaactctattgaaaagt
ttcacttcatcagagaagcatcttttatggaacaaggggttgcatgttgtgaaatctcaa
tggttggaagactgcttggagagggaccaaagattgcaagaaggaccatatagcttgaag
accattggggtgcaagatttggaaattgtagagtgcaatcatgataaacatgaccaggat
ctaggagcccccgctggattggacaatgaagaaaaacagaatatgtccccttctcttgat
ttaagggaacagataacagacaaaactgctttaggaaaacctaaaactttggcctcatat
gaggggatcgggaaaaggaaaagaggaagacctgctggcacaatcatgaacaaaggaaaa
acaactatgacccaagctcgaagaacacggggacgtattggacagaggcctgctaaaata
tgtgataatgaatcagatgaaagcttatctcatgacgagaagacacacagagaagagaac
aacataagagaaggaaatcatgaaacggtaggtacgggaagctcagaaatccaagggact
gaaataatagaagattctgaatcatcagctagaggcaaggcagcggaggaggttgaaaaa
gatattggatatgaagagtggcacgataaagttccaaatgttgaaatgactaaaatgcat
attaatagcaaagacggcgagaggttggagaagttggaagttatggctgatccggttcaa
gccatgttgttggatatgattccgagccttggagcgaaggaagttgggacaagagagaga
attctcaatgatgagaaaccacccttggatcccaatgcagggcctacaaagaaaaagaaa
gtgagctacaaggatgttgctggtgagctgctaaaggattggtaa
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