Campylobacter avium: CAV_0728
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Entry
CAV_0728 CDS
T05533
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cavi
Campylobacter avium
Pathway
cavi03030
DNA replication
cavi03410
Base excision repair
cavi03420
Nucleotide excision repair
cavi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cavi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CAV_0728 (ligA)
03410 Base excision repair
CAV_0728 (ligA)
03420 Nucleotide excision repair
CAV_0728 (ligA)
03430 Mismatch repair
CAV_0728 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cavi03032
]
CAV_0728 (ligA)
03400 DNA repair and recombination proteins [BR:
cavi03400
]
CAV_0728 (ligA)
Enzymes [BR:
cavi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CAV_0728 (ligA)
DNA replication proteins [BR:
cavi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CAV_0728 (ligA)
DNA repair and recombination proteins [BR:
cavi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CAV_0728 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CAV_0728 (ligA)
MMR (mismatch excision repair)
DNA ligase
CAV_0728 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CAV_0728 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
PTCB-BRCT
HHH_2
Nlig-Ia
DNA_ligase_ZBD
HHH_5
BRCT_2
SeqA_N
RPA_interact_C
Motif
Other DBs
NCBI-ProteinID:
ASQ30395
UniProt:
A0A222MWZ9
LinkDB
All DBs
Position
706590..708527
Genome browser
AA seq
645 aa
AA seq
DB search
MDYEQYLEKVSLAKKYVKAYYVDDKPLASDEEYDKLLRELKDFESKNESLISKDSPTQYI
GSVIQSEFKKIRHLKKMWSMEDVFDEEELRAWAKRARCEKGFFVEAKFDGASLNLLYEDG
KLISGATRGDGEVGEDISLNVLEIDNIPKTIAYKGKIEIRGEVLILKDDFEALNESRAKE
AQSLFANPRNAASGSLRQLDTSITRARKLKFYPWGVGEHSLNFKKHSEIMDFIRALGFLK
DDFIRLCENLDEVLKAYKELLALRDKKPMMMDGMVVRIDDLALCESLGYTVKFPRFMAAF
KFPALEKSTKLLGVNLQVGRSGLVTPVAVLEPVELDGVRVSSASLHNFDEIARLDIRIND
YVAVIRSGDVIPKITNVYKDRREGKELLISRPRLCPVCESELLDEGILIRCQNLNCEARL
VNSIIYFVSKRCMNIDGLGESIVELLYKHKKISSIESIYSLKYSDFENLEGFKDKKINNL
LSSIEASKDNELFKFISALGIEHIGEVAAKKIASCFSFEWLDKKKEDFEKLEGFGEQMAL
SLEDFLAINKERILHFYSILRLKNTQQESKTSIFTGKVVVITGSLSKPRDEFKALLESMG
AKVSSSISAKTDFLLCGKDAGSKLEKAKALGIKILSEEEFNSLLV
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
atggattatgagcagtatttagaaaaagtaagcttagctaaaaaatatgtaaaggcatat
tatgtggatgataaacccttagcaagtgatgaagaatacgacaaacttttaagagaactt
aaggactttgaaagcaaaaacgaaagcttaatatcaaaagatagccccactcaatacata
ggctctgttatacaaagtgagtttaaaaagataagacatttaaaaaagatgtggtctatg
gaagatgtttttgatgaagaggagctaagagcttgggcaaaaagagcaaggtgtgaaaag
ggcttttttgtggaggctaaatttgacggagctagtttaaatttgctttatgaagatggc
aaactaataagcggtgctactagaggagatggagaagtaggagaggacataagcttaaat
gtcttagagatagataatataccaaaaactatagcctataaaggaaaaatagaaattcgc
ggagaggttttgatactaaaggatgattttgaagccttaaacgaaagcagggcaaaagag
gcacaaagtctttttgcaaatcctagaaacgcagcttctggctctttaagacagcttgat
accagcataacaagggctagaaagcttaaattttatccttggggtgtgggagagcattct
ttaaattttaaaaaacatagcgagattatggactttataagagctcttggctttttaaag
gatgattttataaggctttgtgaaaatttagatgaggttttaaaagcctataaggagctt
ttagccctaagagataaaaagcctatgatgatggatggtatggttgttaggatagatgat
ttagctctttgtgaaagccttggctacacggttaaatttccaagatttatggcagccttt
aaatttccagctcttgaaaaaagcacaaaattacttggagtgaatttacaggttggaaga
agtgggcttgtaactccggttgcagttttagagcctgttgagctagacggcgttagagta
agctctgcaagcttgcataattttgatgagattgcccgtcttgatataaggataaatgac
tatgtagctgtgattagaagcggtgatgtcataccaaagataactaatgtttataaagat
agaagagagggcaaagagcttttaataagtcgtccaaggctttgtcctgtttgtgaaagt
gagcttttggatgagggaattttgataagatgtcagaacttaaactgcgaggctaggctt
gttaattccataatctactttgtttcaaaaagatgtatgaacatagacgggcttggagaa
agcatagtagagcttctatataagcacaaaaagatatcttccatagaaagcatatattct
ttaaaatatagtgattttgaaaatttagagggctttaaggataagaagataaacaatctt
ttaagctccatagaagcttcaaaggataatgagctttttaaattcatctcagcacttggc
atagagcacataggagaggtggctgctaaaaagatagcttcttgcttttcctttgagtgg
ctggataagaaaaaagaggattttgaaaagctagagggctttggagagcaaatggcactt
tctttggaggattttttagctataaataaagaaagaattttgcatttttacagcatttta
aggcttaaaaacacccagcaagaaagtaaaacttctatatttacaggcaaggtagtggta
ataacaggaagcttatcaaaaccaagagatgagtttaaggctttgcttgagagtatggga
gcaaaggtatcttcttctatctcagcaaagactgattttttactatgcggcaaggatgct
ggctcaaagcttgaaaaggctaaggcactaggcattaagatacttagtgaggaagagttt
aactctttattagtatga
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integrated database retrieval system
