Carnobacterium inhibens: Q783_07425
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Entry
Q783_07425 CDS
T02884
Name
(GenBank) DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
caw
Carnobacterium inhibens
Pathway
caw03030
DNA replication
caw03410
Base excision repair
caw03420
Nucleotide excision repair
caw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
caw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Q783_07425
03410 Base excision repair
Q783_07425
03420 Nucleotide excision repair
Q783_07425
03430 Mismatch repair
Q783_07425
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
caw03032
]
Q783_07425
03400 DNA repair and recombination proteins [BR:
caw03400
]
Q783_07425
Enzymes [BR:
caw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Q783_07425
DNA replication proteins [BR:
caw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Q783_07425
DNA repair and recombination proteins [BR:
caw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Q783_07425
NER (nucleotide excision repair)
GGR (global genome repair) factors
Q783_07425
MMR (mismatch excision repair)
DNA ligase
Q783_07425
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Q783_07425
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
BRCT_2
HHH
Motif
Other DBs
NCBI-ProteinID:
AGY82025
UniProt:
U5S9U2
LinkDB
All DBs
Position
complement(1517729..1519750)
Genome browser
AA seq
673 aa
AA seq
DB search
MPTQDFESAKQRVFDLRTLLDKYSYEYYVKDNPSIPDSDYDKLYHELVALEEEFPDLVSN
DSPTQRVGGTILPGFEKVVHEAPMLSLGNAFNEGDLLDFDRRIKKLTDQPFTYICELKID
GLAVSLKYENGKLVRAATRGDGSVGENVTQNVRTIKSVPLRLKQPYSIEVRGECYMPKDS
FIKLNQEREENGEAIFANPRNAAAGGLRNLDPKQTAKRNLNTFLYTVGDFGELTAASQED
ALNQLDGLGLRTNHDRRVFQTIEEVWQYTQEFQEKRSDLPYEIDGIVIKVNEFEVQEKVG
FTVKAPRWAIAYKFPAEEAHTIIRDIEWSVGRTGVVTPTAIMDPVQLAGTTVQRASLHNE
DLIHERDIRLLDTVVVHKAGDIIPEVTRVVLDERPSDSQPYEIPTHCPACDSELIHLEEE
VALRCMNPKCPAQITEGLSHFVSRNAMNIDGLGIKVLLQMFEKEMVHDVADLYTLTFNQL
VTLDKIKEKSANNLLTAIDASRSNSLERLLFGLGIRHVGAKAAKLIAERFETIEAVQQAE
KEAIISIEGIGEIIAESVVAYFSLPEVTELIQELKSSQVNMTYLGKKKEEVATVDSYFNG
KTVVLTGKLTHFTREEAKERIENLGGNVTGSVSKKTDFIVAGEEAGSKLTKAESLNIPIW
DEVQLLETLEGEE
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atgcctacacaagattttgaatctgcgaaacaaagagtatttgatttgcgaacgttatta
gataaatacagttatgaatattatgtaaaggataatccatctattccagactcagactat
gacaagctgtatcatgaactcgtagctttggaagaagaatttccagacttagtcagcaat
gattctcccactcagcgtgttggaggaacgattttacctggatttgaaaaagttgttcat
gaagcacctatgttaagcttaggaaatgcctttaacgaaggagacctacttgattttgat
cgacgcatcaaaaaactaacggatcaacccttcacctatatttgtgaattgaaaattgat
ggattagcagtgtcgttaaagtacgaaaatgggaaacttgtacgtgcagcaacacgtgga
gacggatctgttggagaaaatgtgacccaaaatgtacgtacgatcaaatctgttccctta
cgtttgaaacaaccttattctattgaagttcgaggcgaatgttatatgcctaaagattcc
tttatcaaattgaatcaagaacgagaagaaaacggagaagctatttttgcaaatccacgt
aatgccgcagcaggcgggttgcgtaatcttgatccaaaacaaacagccaaacggaattta
aatacctttttatatacggtaggcgattttggtgaactaactgctgcgagtcaagaagat
gcactcaatcaattagatggcttagggcttcgcaccaatcacgaccgtagagtatttcaa
acgattgaagaagtatggcagtacacgcaggaatttcaagaaaaaagatctgatttgcct
tatgagatcgatggaattgtgattaaagtaaatgagtttgaagttcaagaaaaagttggg
tttacagtaaaagctccacgatgggcgattgcctataaatttcctgctgaagaagctcat
actatcatacgcgatattgaatggtcagttggacgaacaggtgtcgttacaccaaccgct
atcatggacccagttcagttagctgggacaaccgttcaacgcgcaagtttgcataacgaa
gatttgatacatgaacgagacattcgattgctagatactgttgtcgttcataaagctgga
gacattattccagaagtgactcgtgtcgtgttggatgaacgtccttcagacagccaaccc
tacgaaattcctactcattgcccagcttgtgacagtgaactgatccatttagaagaagaa
gtagctttgcgttgcatgaaccctaaatgcccggctcaaattacagaaggactttctcat
tttgtttctcgaaatgctatgaatattgatggattaggcatcaaggttttattgcaaatg
tttgaaaaagaaatggtgcatgatgtagctgatctttacacattaacgttcaatcaactc
gttacattagataaaattaaagaaaagtcagctaataatttactaacagccattgatgct
agccgtagcaattcattagaaagattattgtttggcctaggcatccgacatgtaggagca
aaagcggcaaaattaattgccgaacgatttgagacgattgaagctgtacaacaagcagaa
aaagaagccatcatttctatagaaggtatcggagaaattattgccgaaagtgtggtagcc
tactttagcttgccggaagtaacagaattgatccaagaattgaaaagcagtcaagtcaat
atgacgtatttaggaaagaaaaaagaagaagtagcgacagtcgattcttacttcaatgga
aaaacagtcgtgttaacaggtaaattgactcattttacgcgagaagaagctaaagaacgc
attgaaaatcttgggggaaatgttacaggaagcgtttctaagaaaacagattttatcgtt
gctggagaagaagctggtagtaaattaacaaaagcagaatcattgaatatccctatttgg
gatgaagttcagttattggaaacattagaaggagaggaataa
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