Caloranaerobacter azorensis: G3A45_08930
Help
Entry
G3A45_08930 CDS
T06467
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cazo
Caloranaerobacter azorensis
Pathway
cazo03030
DNA replication
cazo03410
Base excision repair
cazo03420
Nucleotide excision repair
cazo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cazo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
G3A45_08930 (ligA)
03410 Base excision repair
G3A45_08930 (ligA)
03420 Nucleotide excision repair
G3A45_08930 (ligA)
03430 Mismatch repair
G3A45_08930 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cazo03032
]
G3A45_08930 (ligA)
03400 DNA repair and recombination proteins [BR:
cazo03400
]
G3A45_08930 (ligA)
Enzymes [BR:
cazo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
G3A45_08930 (ligA)
DNA replication proteins [BR:
cazo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
G3A45_08930 (ligA)
DNA repair and recombination proteins [BR:
cazo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
G3A45_08930 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
G3A45_08930 (ligA)
MMR (mismatch excision repair)
DNA ligase
G3A45_08930 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
G3A45_08930 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
Nlig-Ia
BRCT
HHH_5
PTCB-BRCT
HHH
5_3_exonuc
BRCT_2
DNA_ligase_ZBD
tRNA_anti-like
Zn_ribbon_3
Motif
Other DBs
NCBI-ProteinID:
QIB27399
UniProt:
A0A6P1YDH4
LinkDB
All DBs
Position
complement(1727237..1729243)
Genome browser
AA seq
668 aa
AA seq
DB search
MMDKKERIRELVDIINDLNYHYYVLDNPKVSDKEYDKLYDELVKLEQETGIVLSDSPTQR
VGATPLEKFEKHKHLGKLWSLDKCKTALELKNWDTRVRRLIEEYNRENEERLPNPTYVVE
YKFDGLTINLTYREGKLVQGATRGNGEIGEAILPQIKTIKSIPLSIKFKGTVEIQGEGLM
PLSVLEEYNKTADEPLKNARNAAAGALRNLDPKVTAKRKLIAYFYNVGYIEGKSFNTHLE
MIDFLKENRLPVSEYIKTFNSIDEVIEEIERVKEVRNTLDVLTDGLVIKINDMRTREVLG
YTQKFPRWAIAYKFEAEEMTTKLIDVKWNVGRTGKVTPTAILEPVEIGGVTVKRATLNNW
DDIQRKRVKIGCRVWIRRSNDVIPEIMGTVEDSCENPKEIEKPKECPACGSELIQEGVHI
FCPNSLSCKPQLVSRLVHYASRDAMNIEGFSEKTAEQLYEELGLEDIPGLYELKFEQLIN
LDRFGKKKAENLLNAIEKSKNCRLDSFIFALGIPNVGKKTATDLANTFKSLERLMNATYE
ELIAITDIGDKVANSIIEFFTDEKIISNINKLLDEDVNPVYKEEKIENDTIFSGKTVVVT
GTIEGISRKEAKKIITKMGGKVSSSVSKKTDYVIVGENPGSKYDKAMELGIKIITGREFL
DIIDSFSA
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgatggacaaaaaagagcgtattagagaacttgtagatataataaacgatttaaattat
cattactatgttttagacaatcctaaagttagtgataaggagtatgataagctctatgat
gaattagtaaaattggaacaggaaacgggaatagtcttaagcgattctccaacacagaga
gttggagcaacgccgcttgaaaaattcgagaagcataaacatttaggtaaattatggagt
ttggataaatgtaaaactgctttagaattaaaaaattgggatacaagggtaaggagatta
atagaagagtacaatagagaaaatgaagaaagattacctaatcctacttacgtagtcgag
tataaatttgatggccttacaattaatcttacttatagagaagggaaattagtacaaggg
gcgactagaggtaatggagaaataggggaggcaatactgccacagataaaaactataaaa
tcgatacccttgagtataaaatttaaaggtactgttgaaatacagggtgaaggactaatg
cctttatcagttctagaagaatataataagacagcagatgaaccgcttaaaaatgcgagg
aatgcggctgctggagctttgagaaatttagatcctaaagttaccgcaaagagaaaattg
atagcttatttttataatgtaggctatatagaggggaaaagttttaatacacatcttgaa
atgatagatttcttaaaagaaaatagactgccagtcagtgaatatataaagacttttaat
agcattgatgaggtaatagaagaaatagagagagtaaaggaagtcagaaatactcttgat
gttttaacagatggacttgtaataaaaataaatgatatgagaacaagagaggttttaggc
tatacacagaaattcccacgttgggccatagcatataaatttgaagcagaagagatgacg
acgaaactgatagatgttaagtggaatgtgggaagaacgggaaaagttactccgacagcg
atacttgagcctgttgaaataggtggagtaacagttaaaagagctacattaaataattgg
gacgatattcagagaaaaagagttaaaattggctgtagagtatggataagaagatctaat
gacgtaataccagaaataatgggaacagttgaagatagctgcgaaaatcctaaagaaata
gaaaaaccaaaagaatgtcctgcttgtggtagtgagcttattcaagaaggagtgcatatt
ttctgtccgaattctctatcatgtaagccgcagctagtttctagattagttcattatgcg
agtagagatgcaatgaatatagagggattcagtgaaaagacagcagagcagttatacgaa
gaattagggcttgaagatataccagggctttatgagttaaaatttgagcagttaatcaat
ttggatagatttggaaagaaaaaggctgaaaatctgttaaatgcaattgaaaagagtaaa
aattgcagattagactcatttatatttgcattgggaatacctaatgtgggaaagaaaact
gcaaccgatttagctaatacattcaaatctctcgaaagattgatgaatgcaacttatgaa
gaacttatagcaataactgatattggagataaagtggcaaatagtataatagagtttttt
acggatgaaaaaataatttctaatataaataaacttttagacgaagatgtaaatccggtt
tataaagaggaaaagatagaaaatgatactatattttcggggaaaacagttgttgtaact
gggactattgaaggaataagtaggaaagaagcaaaaaaaataataactaaaatgggagga
aaagtatctagtagtgttagtaaaaagactgattacgtaatcgtaggagaaaatccgggt
tctaaatatgataaagcgatggaattaggtataaaaataattactggtagggaattttta
gatattatcgattctttttccgcatga
DBGET
integrated database retrieval system
