Cereibacter azotoformans: LV780_05435
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Entry
LV780_05435 CDS
T07975
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cazt
Cereibacter azotoformans
Pathway
cazt03030
DNA replication
cazt03410
Base excision repair
cazt03420
Nucleotide excision repair
cazt03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cazt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LV780_05435 (ligA)
03410 Base excision repair
LV780_05435 (ligA)
03420 Nucleotide excision repair
LV780_05435 (ligA)
03430 Mismatch repair
LV780_05435 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cazt03032
]
LV780_05435 (ligA)
03400 DNA repair and recombination proteins [BR:
cazt03400
]
LV780_05435 (ligA)
Enzymes [BR:
cazt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LV780_05435 (ligA)
DNA replication proteins [BR:
cazt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LV780_05435 (ligA)
DNA repair and recombination proteins [BR:
cazt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LV780_05435 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LV780_05435 (ligA)
MMR (mismatch excision repair)
DNA ligase
LV780_05435 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LV780_05435 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
UIJ31622
LinkDB
All DBs
Position
1:1088516..1090630
Genome browser
AA seq
704 aa
AA seq
DB search
MQDERPVDQLTEAEAAAELSHLAEAIAAADTAYHTHDAPRISDADYDALKRRNRAIEERF
PALRRPDSPSERVGGALAEGFAKVRHEVRMLSLENAFELAEVEEWIERIRRFLGHVGDLR
FTAEPKIDGLSLSLRYEKGRLVQAATRGDGETGENVTENARTIGDLPTELTGAPDLLEVR
GEVYMRHADFAALNERQEATGQRLFANPRNAAAGSLRQLDPAVTASRPLHFFAYAWGAHS
EPLADTQQGAIARLSALGFATNPLTRLCTGPDELLAHYADIERQRASLGYDIDGVVYKVD
DLALQRRLGFRASTPRWAIAHKFAAELAWTQLEGIDIQVGRTGALSPVARLKPVTVGGVV
VANATLHNEDYIAGRDSKGQEIRGGKDIRVGDWVQVYRAGDVIPKVAEVDLSRRPEGAVP
YRFPDTCPDCGSAAIREPGDSVRRCTGGLICPAQQVERLKHFVSRAAFDIEGLGAKQVEA
LWRDGWIRQPADIFDLPNRYREGLQRLENREGWGRKSAENLFAAIEAARRIALHRLIFAL
GIRHVGETTATLLATHYGSWAAFEAAMTRAEVGTGSEWQDLLSIDGVGAVLATSLVTTFH
QEAERAAIDALAAHLTVEDAEMRTPVESPIAGKIVVFTGTLEKMSRNEAKARAEALGAKV
SGSVSARTDLVVAGPGAGSKAKQAAALGVETIDEDAWLRLIGDA
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atgcaggacgagaggccggtggatcagctgaccgaggcggaagccgcggcagagctttcg
catctggccgaggccattgcggcggccgataccgcctaccacacccacgacgcgccgcgc
atcagcgacgccgactatgacgcgctgaagcggcgaaaccgcgccatcgaagagcggttt
cccgcgctccgccgccctgacagcccgagcgaacgggtggggggcgcgctggccgaaggc
tttgcgaaggtccgccacgaggtgcggatgctctcgctggagaacgccttcgaacttgcc
gaggtcgaggagtggatcgagcggatccgccgcttcctcggccatgtgggcgacctgcgc
ttcacggccgagcccaagatcgacgggctctcgctctcgctccgttacgaaaagggccgg
ctggtgcaggccgccacccgcggcgacggcgagacgggcgagaatgtcaccgagaacgcc
cgtaccatcggcgacctgccgacggaattgaccggcgcgccggacctgctcgaggttcgc
ggcgaggtctatatgcgccacgcggattttgcggcgctgaacgaacggcaggaggccacg
ggccagcgcctgttcgccaatccgcgcaacgcggccgccgggtcgctccgccagcttgat
cccgccgtcaccgcttcgaggccgcttcatttcttcgcctacgcctggggcgcccattcc
gagcctctggccgacacccagcagggcgccatcgcgcggctctccgcgctcggctttgcg
acgaacccgctcacgcggctctgcaccggccccgatgaactgctcgcccattacgccgac
atcgaacgccagagggcgagcctcggctatgacatcgacggcgtggtctacaaggtggac
gacctcgcccttcagcgcaggctgggcttccgcgcctcgaccccccgctgggccatcgcg
cacaagttcgcggccgagctggcctggacccagctcgaggggatcgacatccaggtgggc
cgcaccggcgcgctctcgcccgtcgcgcggctgaagcccgtgacggtgggcggcgtggtg
gtggccaatgccacgctccacaacgaggattacatcgccggccgcgactcgaaggggcag
gagatccgcggcggcaaggacatccgcgtgggcgactgggtgcaggtctatcgtgcgggc
gacgtgatccccaaggtggccgaggtggatctgtcccgccgtcccgagggcgccgtgccc
taccgctttcccgacacctgccccgactgcggctcggccgcgatccgcgaaccgggcgat
tcggtgcgccgctgcacgggcgggctgatctgccccgcccagcaggtcgagcggctgaag
cacttcgtctcgcgcgcggccttcgacatcgagggtctgggcgccaagcaggtcgaggcg
ctctggcgcgacggctggatccggcagcccgccgacatcttcgatctgccgaaccgctac
cgcgagggtctccagcggctcgagaaccgcgagggctggggccggaagtcggccgaaaac
ctctttgccgctatcgaggcggcgcggcggatcgcgttgcaccggctgatcttcgccctg
ggcatccgccatgtcggcgagacgaccgccacgcttctggccacccactacggcagctgg
gcggccttcgaggccgcgatgacccgcgccgaggtggggacggggtccgagtggcaggat
cttctgtcgatcgacggggtgggcgcggtgcttgcgacctcgctcgtgaccaccttccac
caggaggcggagcgggcggccatcgacgcgctggccgctcacctcacggtcgaggatgcc
gagatgcggacgccggtcgaaagcccgatcgcgggcaagatcgtggttttcaccggcacg
ctcgagaagatgtcgcgcaacgaggccaaagcgcgggccgaggcgctcggagccaaggtc
tcgggctcggtctcggcccggacagacctcgtggtggcgggaccgggggcggggtccaag
gcaaaacaggccgcggcgctgggggtcgagaccatcgacgaggacgcctggctgcgcctg
atcggcgacgcatga
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integrated database retrieval system
