Serpentinimonas raichei: SRAA_0963
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Entry
SRAA_0963 CDS
T03614
Name
(GenBank) NAD-dependent DNA ligase containing BRCT domain type II)
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cbaa
Serpentinimonas raichei
Pathway
cbaa03030
DNA replication
cbaa03410
Base excision repair
cbaa03420
Nucleotide excision repair
cbaa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cbaa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SRAA_0963
03410 Base excision repair
SRAA_0963
03420 Nucleotide excision repair
SRAA_0963
03430 Mismatch repair
SRAA_0963
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cbaa03032
]
SRAA_0963
03400 DNA repair and recombination proteins [BR:
cbaa03400
]
SRAA_0963
Enzymes [BR:
cbaa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SRAA_0963
DNA replication proteins [BR:
cbaa03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SRAA_0963
DNA repair and recombination proteins [BR:
cbaa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SRAA_0963
NER (nucleotide excision repair)
GGR (global genome repair) factors
SRAA_0963
MMR (mismatch excision repair)
DNA ligase
SRAA_0963
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SRAA_0963
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
PTCB-BRCT
HHH
DNA_ligase_ZBD
BRCT_2
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
BAO80817
UniProt:
A0A060NHY0
LinkDB
All DBs
Position
1011183..1013327
Genome browser
AA seq
714 aa
AA seq
DB search
MSDTPDPIDAPRARLQTLRALLQRHAHLYHVLDAPEVPDAQYDAWWQELLQLEALHPEWV
APDSPSQRVGAPLREGFAPVAHRVPMLSIRTETDTQPSGALAFDARLRKELGLSPTDPEL
AYLAEPKFDGLAINLRYAAGLLVQAATRGDGATGEDVTHSVRTIGAIPLRLDERVRPAPA
LLEVRGEVFMRRDDFEALNERQRQRIAAGAKGEKTFVNPRNAAAGAVRQLDPAITAERRL
SFFAYGWGEIRMLADAAAPSAATADGVPMAPPFASQHEGLLALRDWGVPVCDLVQRCYGA
LELVQYHQRIGALRDSLPFDIDGVVYKLDRLEWQQRLGFVTREPRWALAHKYPAQEQSTQ
VLAIEVQVGRTGKLTPVARLAPVFVGGVTVTNATLHNAEEVLRKDVRVGDTVVVRRAGDV
IPEVVGVVPDLGSSGAARGPAWQMPLACPVCGSALLREPDSPEQRCGAGLSCPAQRKQAL
WHAVSRRALNIEGLGDRLIEQLVDSGKVRSLPDLYRLNAHELAGLERMADKSALNLMQAI
EASKRTTLARLLYALGMRHVGERTAKDLAQHFGSLQRLQQASEEELLQVPDVGPVVAQSV
HDFFRQPAHLELLAQLRQGGVHWSEGEGEGEGAPALPLAGKTLVLTGTLPTLSREAAQAL
IEAAGGKVSGSVSKKTAYVVAGSEAGSKLERARELGLPVLDEAGLRALLKAEAD
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atgtccgatacgcccgatccaatcgatgcgccccgcgcgcgcctgcaaaccctgcgcgct
ttgttgcagcggcacgcgcacctctaccatgtgctggatgcgcccgaggtgcccgatgcc
cagtacgacgcctggtggcaagagctgttgcaactcgaggccttgcaccccgaatgggtg
gcgcccgattcgcccagccagcgcgtgggggcgccgctgcgtgagggttttgcgccggtt
gcgcaccgggtgccgatgctcagcatccgcaccgaaaccgatacccagcccagcggggcc
ttggcttttgatgcgcgcctgcgcaaagaactcggcctgtcgcccaccgaccccgagctg
gcctacctggccgagcccaagtttgacgggctggccatcaacctgcgctacgcggcgggc
ctgttggtgcaggccgccacccgcggcgatggcgctacgggcgaggacgtgacgcacagc
gtgcgcaccatcggcgcgattcccttgcggctcgatgagcgcgtgcgcccagccccggcg
ctgctggaggtgcgcggcgaggtgttcatgcgccgcgacgactttgaggcgcttaacgag
cgccagcgccagcgcatcgccgccggagccaagggcgaaaaaacctttgtcaacccgcgc
aatgcggcggccggggcggtgcgccagctcgatcccgccatcacggccgagcggcgcctg
agtttttttgcctacggttggggtgaaattcgcatgcttgccgatgccgctgcgcccagc
gctgcaacggcggacggcgtgcccatggcgcccccttttgccagccagcacgagggcttg
ctggccctgcgcgactggggggtgccggtttgcgatctggtgcagcgctgctatggggcg
ctcgaactggtgcagtaccaccaacgcatcggggccttgcgcgacagcctgccgtttgac
atcgacggcgtggtctacaagctcgatcgccttgagtggcagcagcggctgggctttgtg
acgcgcgagccgcgctgggccttggcgcacaaatacccggcgcaagagcagagcacgcag
gtgctggcgatcgaggtgcaggtggggcgcaccggcaagctcacgccagtggcccggctg
gcgccggtgttcgtgggcggcgtgaccgtcaccaacgccaccttgcacaatgccgaggag
gtgctgcgcaaagacgtgcgcgtgggcgacactgtggtcgtgcgccgcgccggcgacgtg
attcccgaagtggtgggggtggtgccagatttgggttcgagcggcgccgcgcgcggcccg
gcgtggcagatgccgctggcctgcccggtgtgcggctccgccttgctgcgcgagcccgac
tcgcctgagcagcgctgcggcgccggcttgagttgcccggcccagcgcaagcaggcgctg
tggcacgccgtcagccggcgcgcgctgaacatcgaaggcttgggcgacaggctgatcgag
caactggtggattcgggcaaggtgcgcagcctgcccgatctgtaccgcctaaacgcgcac
gagctggccgggctcgagcgcatggccgacaaatcggcgctcaatttgatgcaggccatc
gaggcctccaagcgcaccaccttggcccgcttgctgtatgcgctgggcatgcgccacgta
ggcgagcgcaccgccaaagacctggcgcagcactttggcagcttgcagcgcttgcagcag
gccagcgaggaagagttgctgcaagtgcccgatgtggggccggtggtggcgcaaagcgtg
cacgatttttttcgccaacccgcgcacctcgagctgctggcgcaactgcgccaaggcggc
gtgcactggagcgaaggcgaaggcgaaggcgagggcgcgcctgcgctacccctagccggc
aaaacgctggtgctcaccggcaccctgcccacgctctcgcgcgaggcggcgcaggcgctg
atcgaggccgccggcggcaaggtgagcggctcggtgagcaagaaaacggcctacgtggtg
gcgggcagcgaggccggctccaagctggagcgggcgcgcgaactcgggctgccggtgcta
gacgaagcgggactgcgcgcgctgcttaaagcggaggcggattaa
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