KEGG   Berryella intestinalis: JI75_08015
Entry
JI75_08015        CDS       T03545                                 
Name
(GenBank) DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
cbac  Berryella intestinalis
Pathway
cbac03030  DNA replication
cbac03410  Base excision repair
cbac03420  Nucleotide excision repair
cbac03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cbac00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    JI75_08015
   03410 Base excision repair
    JI75_08015
   03420 Nucleotide excision repair
    JI75_08015
   03430 Mismatch repair
    JI75_08015
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cbac03032]
    JI75_08015
   03400 DNA repair and recombination proteins [BR:cbac03400]
    JI75_08015
Enzymes [BR:cbac01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     JI75_08015
DNA replication proteins [BR:cbac03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     JI75_08015
DNA repair and recombination proteins [BR:cbac03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     JI75_08015
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     JI75_08015
   MMR (mismatch excision repair)
    DNA ligase
     JI75_08015
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      JI75_08015
SSDB
Motif
Pfam: DNA_ligase_aden OB_DNA_ligase HHH_2 HHH_5 BRCT DNA_ligase_ZBD Nlig-Ia HHH PTCB-BRCT HHH_8 5_3_exonuc
Other DBs
NCBI-ProteinID: AJC12606
UniProt: A0A0A8B560
LinkDB
Position
complement(1771833..1773944)
AA seq 703 aa
MDLFDGGETEGKEQVRERIEALRREVEHHTYLYYAKDAPEISDAAFDSLMRDLRELEAAN
PEFFDPSSPTQRVGGYVGDQFAPVRHEKRMYSLDNAMDLAELDAWFDRVEEFFGELPALN
CELKIDGSGIALTYEDGVLVRAATRGDGTTGEDVTVNVRSIRDVPLRLRAEGLEGVAREG
SLEVRGEVYMPKSSFESLNRAAEEEGRPAFANPRNAAAGSLRQKDAAVTASRDLSTFVYA
IADESSVSAAGQSDLLAWMGESGFHVNPDVERCSSRGEVREFCEHALELRESLPYEIDGV
VVKVDSFALQTAMGFTSRAPRWAIAYKFPPEEKTTVLRDITVQVGRTGKLTPVAELDPVV
VAGSTVARATLHNEDEVVRKDVRIGDTVVIRKAGDVIPEILGPVASLRPGSAVPWRMPEA
CPSCGSAVIREEGEVDYRCISIDCPAQSVERLIHWVGRGALDIDGMGEEIVGRLVEVGRV
TDVADYYTLDEDELAALDMGRLNKEGQPIRLGRTVAKKLVDQIDQSRLRPLARVLFGLGI
RHVGKATAETIAAAYGTIDALMEATEEDLAAVEGVGPKIAHSISAFLHTPKNAEVIARLR
KNGVVMADEPADGGNELAQTLEGLTFVLTGALVESGMTRDEAASELKARGAKVSSSVSKK
TSYVIAGEAAGSKYDKAVSLGVPVLGEADLMTIIETGNPPAAS
NT seq 2112 nt   +upstreamnt  +downstreamnt
ttggacctgttcgacggcggcgagacggagggcaaagagcaggtgcgcgagcgcatcgag
gcgctgcggcgcgaggtcgagcaccatacctacctgtactacgccaaggacgcccccgag
atatcggacgcggcgttcgactcgctcatgcgcgatctgcgcgaactcgaggcggcgaac
cccgagttcttcgacccgtcgtcgcccacccagcgcgtgggcgggtacgtgggcgaccag
ttcgccccggttcggcacgagaagcgcatgtattcgctggacaacgccatggatcttgcc
gagctcgacgcatggttcgaccgcgtcgaggagttcttcggagagcttccggcgctgaac
tgcgagctgaagatcgacggttccggtatcgcactcacctacgaggacggggtcctggtg
cgcgctgcgacgcgcggggacggcaccacgggcgaagacgttaccgtgaatgtgcgttcg
atcagggacgttcccttgcgcctgagggcggagggcctggagggggtagcccgcgaggga
tccctcgaggtgcgcggcgaggtgtacatgcccaaatcgagcttcgaatccctcaaccgc
gcggcggaagaagaggggcgcccggcgttcgccaacccgcgcaacgccgctgcgggcagc
ctgcggcagaaagacgctgcggtgacggcttcgcgcgacctgtcgacgttcgtctacgcc
atcgccgacgaatcgtccgtgtcggcggcgggtcagtccgatctgctcgcgtggatgggc
gagtcgggctttcatgtgaaccccgacgtcgagcgctgctcgtcgagaggcgaggtgagg
gaattctgcgaacacgcgctcgaactgcgcgaatcgcttccctacgagatcgacggcgtg
gtggtgaaggtcgattcgttcgccttgcagacggctatggggttcacgtcgcgtgcgccg
cgctgggccatcgcctacaagttcccgcccgaagagaagaccacggtcctgcgcgatatc
accgtccaggtgggccgcaccggcaagctgacgccggtggcagagctcgatcccgtcgtg
gtcgccggctccacggtggcgcgggccacgctgcacaacgaagacgaggtggtccgtaag
gacgtgcgcatcggcgataccgtggtgatccgcaaggccggagacgtcatccccgagatc
ctcggccccgtggcgtccctgcgccccgggagcgccgttccgtggcgcatgcccgaggcg
tgcccgagctgcggaagcgcggtcattcgcgaagagggagaggtcgactaccgctgcatc
tccatcgactgccccgcccagtcggtcgagcgcctgatccactgggtgggcaggggcgcg
ctcgacatcgacggcatgggcgaggagatcgtggggcgcttggtggaagtgggccgcgtg
accgacgtcgccgactactacacgctcgacgaggacgagctggccgcactggacatgggg
cgcctcaacaaggaggggcagcccatccggttgggccgtacggtggcgaagaagctggtc
gaccagatcgaccagagcaggctccgcccgcttgcgcgcgtcttgttcggcctggggata
cggcatgtgggaaaggccacggccgagacgatcgccgcagcgtacgggaccatcgacgcg
ctgatggaggcgaccgaggaggatctggcggcggtcgagggcgtgggccccaagatagcc
cacagcataagcgcgtttctccatacgccgaaaaacgccgaggtgatcgcgcggcttcgc
aagaacggcgtggtgatggccgatgagccggccgacgggggaaacgagcttgcccagacc
ctggaggggctgacgttcgtgctgactggagcgctggtcgagtcgggcatgacgcgcgac
gaggcggccagcgagctgaaggcgcgcggcgcgaaggtgtcttcgagcgtctcgaagaaa
acgagctacgtcatcgcaggcgaggcggccggatcgaaatacgacaaggcggtctctttg
ggcgtgcccgtgctgggggaggccgatctcatgaccatcatcgagacggggaaccctccc
gccgcatcgtga

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