Coxiella burnetii CbuK_Q154: CbuK_1296
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Entry
CbuK_1296 CDS
T00788
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cbc
Coxiella burnetii CbuK_Q154
Pathway
cbc03030
DNA replication
cbc03410
Base excision repair
cbc03420
Nucleotide excision repair
cbc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cbc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CbuK_1296 (ligA)
03410 Base excision repair
CbuK_1296 (ligA)
03420 Nucleotide excision repair
CbuK_1296 (ligA)
03430 Mismatch repair
CbuK_1296 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cbc03032
]
CbuK_1296 (ligA)
03400 DNA repair and recombination proteins [BR:
cbc03400
]
CbuK_1296 (ligA)
Enzymes [BR:
cbc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CbuK_1296 (ligA)
DNA replication proteins [BR:
cbc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CbuK_1296 (ligA)
DNA repair and recombination proteins [BR:
cbc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CbuK_1296 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CbuK_1296 (ligA)
MMR (mismatch excision repair)
DNA ligase
CbuK_1296 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CbuK_1296 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
5_3_exonuc
RNA_ligase
BRCT_2
Tsp45I
Motif
Other DBs
NCBI-ProteinID:
ACJ20477
UniProt:
B6J878
LinkDB
All DBs
Position
complement(1256291..1258312)
Genome browser
AA seq
673 aa
AA seq
DB search
MNGVEVPAKIQKRIERLREEINDHNYRYYVLSQPTIPDSVYDELFHELQKLEKKYPETIT
PSSPTQRVGAEPLKVFEPVHHEIPMLSLDNVFDEKGLRAFDKRIRQRLKLDKPFEYVCEP
KMDGVALSLLYENGELIRAATRGDGYTGENVTQNTRTIASVPLQLRGNDYPELVEIRGEV
LMPREGFAKFNREAEKRGDKTFANPRNAASGSLRQLDPRITAKRPLIFYGYLIGLLKGKD
FPKNHCDVLKWFKDWGIPVISEIKVVGGIEGCLDYYEHLVKTREKMPFDIDGIVIKVNSL
QVQAELGFVSRAPRWAIAYKFPAQEKMTVVKAIEFQVGRTGAVTPVARLEPVSVSGVTVS
NATLHNFDELYRKDVRVGDTVIVRRAGDVIPEVVGPILAKRPKKAKLIKIPSRCPVCHAE
VIKPEGEAVARCMGGLYCRAQLRESIKHFASRRALDIEGLGDKLVELFIQEKLIKDITGI
YQLKKSAITALPRMGEKSAENLLTAIEKSKKTTLPRFLYALGIRGVGDTTARTLARHFHE
LDLLMKASIETLQEIRDIGPVVAENIHAFFHQKHNAELINKLIHLGVHWPQEKAVVKSEI
AGKTFVLTGALKSLTREEAEEKIERSGGKATSSVSKNTDYVIVGENPGSKYEKAKALGIS
LIDEEAFLKLLKS
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
gtgaatggtgtggaagttcctgcaaaaattcaaaagcggatcgagcggttgcgcgaggaa
attaatgatcataattatcgttattacgtattatcacagcccactattcccgactccgtt
tatgatgaactttttcatgagttacaaaagttagagaaaaaataccctgaaacaatcacg
ccttcgtctcctacgcaacgcgtaggtgctgagccattaaaagtgtttgaacccgttcat
catgaaattccgatgttatcgctggataacgtgtttgatgaaaaagggttgcgggctttt
gataaacgcattcggcagcgattgaaactcgataaacccttcgaatatgtgtgtgaacca
aagatggatggtgtcgccctcagtttactttacgaaaatggcgaattaattcgggccgcc
acgcggggagatggatataccggcgaaaacgtgactcaaaatacgcgaacgattgcatcg
gttcccttacaattgcgtggaaacgattatcctgaattagtggaaatacgtggcgaagtg
ctaatgccgcgagagggttttgcaaaatttaatcgggaggctgaaaaacgtggcgacaaa
accttcgccaatccgcgtaacgcagcatctggtagtttgcgtcagctggacccgcggatt
acagccaaacgcccccttattttttacggttatttaatcggtttacttaaaggaaaagac
tttccgaaaaatcattgtgacgtattgaagtggtttaaggattgggggattccagttatt
tctgaaataaaagttgtaggtggcatagagggttgtcttgattattacgaacatttagta
aaaactcgtgaaaaaatgccttttgatatcgatgggatcgttataaaagtaaattctctg
caagttcaggctgaattaggattcgtttcgcgggcgccacgatgggctatcgcctataaa
tttccagcccaggaaaaaatgacggtagtgaaagccatcgagtttcaagtaggacgcacg
ggcgctgttaccccagtggctcgtttagaaccggtgtcggtaagtggagtgacggtcagt
aatgcgactttgcacaatttcgacgaactttatcgtaaagacgtccgcgttggggatacg
gttattgtgcgtcgagcgggtgatgtaattcccgaagtggtaggaccgattttagcaaag
cgccccaaaaaggcaaaactcataaaaataccgtctcgctgtcctgtttgccacgcggaa
gtcattaaaccggagggtgaagcagtagcgcgctgcatggggggattatattgccgggct
caattgcgtgagagtataaagcattttgcttcccgtcgggcgttggatattgaggggtta
ggagataaattggtagagcttttcattcaggaaaaattaattaaagacattacgggaatt
tatcaacttaaaaaatcagcaattacagctttgccgcgtatgggggaaaaatcggcagaa
aatttattaacagcaattgagaaaagtaaaaaaacaaccttgccgcgttttttgtatgca
ctgggaattcgcggcgttggtgatactaccgctcgaacgctagcgcgtcattttcacgaa
cttgaccttttaatgaaagcatcaattgaaaccttacaggaaattcgcgatatcggcccc
gtagtggcagaaaatattcatgcttttttccatcaaaaacataatgcggaattaattaat
aaattaattcatttaggcgtgcattggccgcaagagaaagcagtggtgaaatcggaaatt
gctggtaagacattcgtacttaccggtgctttgaaatcattaactcgcgaggaagcggaa
gaaaaaatcgaacgatcaggagggaaggcgaccagcagcgtatcgaagaatacggattat
gtgatcgtgggtgaaaacccgggtagcaaatacgaaaaggcaaaagcattgggaatttcg
cttattgatgaagaagccttcttgaaattactgaaatcgtaa
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