KEGG   PATHWAY: cbh03030
Entry
cbh03030                    Pathway                                
Name
DNA replication - Clostridium botulinum A Hall
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
cbh03030  DNA replication
cbh03030

Organism
Clostridium botulinum A Hall [GN:cbh]
Gene
CLC_0002  dnaN; DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
CLC_0051  dnaX; DNA polymerase III subunits gamma and tau [KO:K02343] [EC:2.7.7.7]
CLC_0104  [KO:K02341] [EC:2.7.7.7]
CLC_0314  [KO:K02342] [EC:2.7.7.7]
CLC_0439  rnhA; ribonuclease H [KO:K03469] [EC:3.1.26.4]
CLC_2270  polC; DNA polymerase III PolC [KO:K03763] [EC:2.7.7.7]
CLC_2289  rnhB; ribonuclease HII [KO:K03470] [EC:3.1.26.4]
CLC_2834  dnaG; DNA primase [KO:K02316] [EC:2.7.7.101]
CLC_2864  holA; DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
CLC_2911  polA; DNA polymerase I [KO:K02335] [EC:2.7.7.7]
CLC_3213  ligA; NAD-dependent DNA ligase LigA [KO:K01972] [EC:6.5.1.2]
CLC_3317  dnaE; DNA polymerase III DnaE [KO:K02337] [EC:2.7.7.7]
CLC_3619  dnaB; replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
CLC_3626  ssb; single-strand binding protein [KO:K03111]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   

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