Clostridium botulinum Ba4: CLJ_B3551
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Entry
CLJ_B3551 CDS
T00895
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cbi
Clostridium botulinum Ba4
Pathway
cbi03030
DNA replication
cbi03410
Base excision repair
cbi03420
Nucleotide excision repair
cbi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cbi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CLJ_B3551 (ligA)
03410 Base excision repair
CLJ_B3551 (ligA)
03420 Nucleotide excision repair
CLJ_B3551 (ligA)
03430 Mismatch repair
CLJ_B3551 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cbi03032
]
CLJ_B3551 (ligA)
03400 DNA repair and recombination proteins [BR:
cbi03400
]
CLJ_B3551 (ligA)
Enzymes [BR:
cbi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CLJ_B3551 (ligA)
DNA replication proteins [BR:
cbi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CLJ_B3551 (ligA)
DNA repair and recombination proteins [BR:
cbi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CLJ_B3551 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CLJ_B3551 (ligA)
MMR (mismatch excision repair)
DNA ligase
CLJ_B3551 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CLJ_B3551 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
PTCB-BRCT
HHH
RNA_ligase
DNA_ligase_ZBD
5_3_exonuc
Nlig-Ia
BRCT_2
POLH-Rev1_HhH
RNA_pol_A_CTD
ILEI
DUF7501
Zn_ribbon_PADR1
Motif
Other DBs
NCBI-ProteinID:
ACQ54389
UniProt:
C3KUA1
LinkDB
All DBs
Position
complement(3545770..3547764)
Genome browser
AA seq
664 aa
AA seq
DB search
MDNKLEKMKKLVEELNQYAYEYYVLDNPSISDKEYDLKYDELVILEKETQVTLPYSPTQR
VGDKILGEFSKYTHKGRLWSLDKAQNMEQLIEWHNRNLKVIEQYNSMSEDKLPELRYIVT
KKFDGLTVNCTYDENGILIKSATRGTGIIGEDITAQIKTIKTVPLKIKNNHVIEVHGEAI
MTKTAFEEYNKAAQVPLKNLRNGAAGALRNLDIKETARRNLSAFFYDVGYNEGPEFKSYR
EMMNFIRNMGLPQDKYIKECTNMEEVEKEIEYIESIREELDYDIDGAVIVVDDIKTREIL
GYTIKFPKWAIAYKFEAKEITTKLLDVEWNVGRSGRVTPTALLEPVELGGVTVKRATLNN
MDDIKRKNVKLGAKVLVRRSNDVIPEIMGVVEESLEESKEIQAPDRCPYCNSHLVQNGVH
YYCENTLSCKPQMVKSIVHFASREAMNIAGFSGKTAEQLFERLDIKSISDLYKIRKEELL
TLDKFGDKKSQNLIDAIENSKNCDLASFIYALGIPNVGKKTANDLVMKFKTLESIKNTTI
EQLVEVPDVGEIVAKSIYDFFEDEKIISNIEELLNLGVKPYYEEERIDENPFMGKTIVVT
GSLNNYSRGEIKDKLQSLGAKVSSSVSKNTDYVLVGEKPGSKYEKAIELGVKVINEEEFS
NKIK
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atggataacaagttagaaaaaatgaagaaacttgtagaagaattaaatcagtatgcctat
gagtattatgtattagataatcccagtatatctgataaagaatatgatttgaaatatgat
gaattagtaattttggagaaggaaactcaagttacattaccttattcaccaacccaaagg
gttggtgataaaatattaggtgaatttagtaagtatactcacaaaggaagactttggagt
ttggataaagcccaaaatatggagcagttaatagagtggcataatagaaatttaaaagtt
atagagcaatataattctatgagtgaagataaattaccagaattgagatatatagttact
aaaaaatttgatggattaacagtaaattgtacctatgatgaaaatggaattttaataaag
agtgctacaagggggacaggaattataggtgaagatataacagctcaaataaaaactata
aagacagttccattaaaaataaaaaataaccacgttatagaagtgcatggagaagctata
atgaccaaaacagcttttgaagaatataataaagcagctcaagttccactaaagaattta
agaaatggagcagcaggagctcttagaaatctagatattaaagaaactgctagaaggaat
ttatccgcatttttttatgatgtaggttataatgaaggtccagaatttaaaagttataga
gaaatgatgaattttataagaaatatgggactgcctcaggataagtatattaaagaatgt
actaacatggaggaagtggaaaaagaaattgaatatatagaatccataagagaagaactg
gattatgatatagatggggcagtaattgttgtagatgatatcaaaacaagagagatatta
gggtatactataaaattcccaaaatgggctatagcttataaatttgaagctaaggaaatt
actacaaagcttctagatgtagaatggaatgtaggaagaagcggaagagttactccaaca
gctttattagaacccgtagaactaggtggagttacagtaaaaagagctacgctaaataac
atggatgacattaagagaaaaaatgtaaaattgggtgctaaggttttagttagaagatct
aatgatgttataccggagataatgggagtagtagaagaatctttagaggaaagtaaggaa
atacaggcaccagatagatgtccttattgtaatagccatctagtacaaaatggagtacat
tattattgtgagaatacattatcttgtaaaccacagatggtaaaaagtatagttcatttt
gctagtagagaagctatgaatatagcaggattcagtggaaagactgcagaacaacttttt
gaaagattagacataaaatctatatcagatttgtataagataaggaaggaagaattgcta
actttagataaatttggggataaaaaatctcaaaatcttatagatgctatagaaaatagt
aaaaattgtgatttagcatcctttatatacgcattaggtatacctaatgtaggtaaaaag
actgccaatgatttagtaatgaaatttaaaactttagaatctataaagaatacaacaata
gaacaactagtagaagttccagatgtgggggaaatagtagctaagagcatatatgatttt
tttgaagacgaaaaaattataagtaacatagaagagttattaaatttgggtgtaaaacct
tattatgaagaagaaagaattgatgaaaatccttttatgggtaaaactatagttgtaaca
ggaagtttgaataattatagcagaggggaaataaaagataaattacagtctttaggagct
aaagtttctagtagtgtaagtaaaaatacagactatgttttagtaggggaaaaaccagga
tctaaatatgaaaaagcaattgaattaggagtaaaagtaattaacgaagaagaattttct
aataaaattaaataa
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