Clostridium botulinum B Eklund 17B (NRP): CLL_A0409
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Entry
CLL_A0409 CDS
T00696
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cbk
Clostridium botulinum B Eklund 17B (NRP)
Pathway
cbk03030
DNA replication
cbk03410
Base excision repair
cbk03420
Nucleotide excision repair
cbk03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cbk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CLL_A0409 (ligA)
03410 Base excision repair
CLL_A0409 (ligA)
03420 Nucleotide excision repair
CLL_A0409 (ligA)
03430 Mismatch repair
CLL_A0409 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cbk03032
]
CLL_A0409 (ligA)
03400 DNA repair and recombination proteins [BR:
cbk03400
]
CLL_A0409 (ligA)
Enzymes [BR:
cbk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CLL_A0409 (ligA)
DNA replication proteins [BR:
cbk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CLL_A0409 (ligA)
DNA repair and recombination proteins [BR:
cbk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CLL_A0409 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CLL_A0409 (ligA)
MMR (mismatch excision repair)
DNA ligase
CLL_A0409 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CLL_A0409 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
PTCB-BRCT
HHH
DNA_pol_lambd_f
5_3_exonuc
DNA_ligase_ZBD
BRCT_2
Nlig-Ia
POLH-Rev1_HhH
RNA_pol_A_CTD
Zn_ribbon_PADR1
Motif
Other DBs
NCBI-ProteinID:
ACD22265
UniProt:
B2TIZ7
LinkDB
All DBs
Position
420034..422037
Genome browser
AA seq
667 aa
AA seq
DB search
MVDKIERIKELVEILNKYSYDYYVLDNPSVSDKDYDKEYDELKLLEKETGFVLPYSPTLR
IGDVVLQGFNKYTHKGKLWSLDKAQSLDEIKDWHNRNIKFVNEMRAQGEDLPDLKYIATK
KFDGLTVNLTYNKGGMLEVSATRGNGEIGENVTSQVKTIKSIPLKLQENDDLFEVHGEAI
MTQEAFEKYNASADIPLKNLRNGAAGALRNLNIKETARRDLSAFFYDVGYKEGYQFKTYL
EMMDFIKEKGLPIDEYLKVCTSIDDIKKEIEYIEKIRFDLNYDIDGLVIAIDDIRTRELL
GYTVKYPKWAIAYKFEAQEATTKLLDVEWNVGRSGRIGPTAILEPVELAGVTVKRATLNN
MDDIKRKGVRIGADVFVRRSNDVIPEIMGTLENTLENSEEICPPTECPACGSHVVLNGAH
YFCENTLSCKPQLVKTIVHYASRDAMNIAGFSEKTAEQLFEKLNIKSISDLYKLKKEDLI
NLEKFGEKKSENLLNAIEKSKDCKLYSFIYALGIPNVGVKTAKDIVNKFKSIDGLKNATF
EELVSVQDVGDIVAQDVIEFFKEEKVINTIDELLNLGVNPIFDEVKIVESIFKDKTVVTT
GTLQNYSRTEIKTKLESLGAKVSGSVSKKTDYVIAGESAGSKLTKAEELGVKIISEEEFE
KMLGRES
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atggtggataaaatagaaagaataaaagagcttgttgaaatattaaataagtactcatat
gattattatgtgcttgataatccatctgtaagtgataaggattatgataaagaatatgat
gaacttaaattattagaaaaggaaactggttttgtacttccgtattcacccacattaaga
ataggtgatgttgttttacaaggatttaataaatatacacacaagggaaaactttggagc
ttggataaagctcaaagtttagatgaaataaaagattggcacaatagaaatataaaattt
gttaatgagatgagagctcaaggtgaagatttaccggatttaaaatatatagccactaaa
aagtttgatgggttaacagttaacctaacttataataagggaggtatgcttgaagttagt
gcaacaagaggtaatggagaaataggggagaatgtaacatcgcaagtaaaaactattaaa
tctataccattaaaacttcaagaaaatgatgatttatttgaagtgcatggcgaagctatt
atgacacaagaagcttttgaaaaatataatgctagtgcagatattccattaaagaactta
agaaatggtgcagctggagctttaagaaatcttaatataaaagaaactgctagaagagat
ttgtcagcatttttctatgatgttggttataaagaaggctatcaatttaaaacttattta
gaaatgatggactttataaaagaaaaagggcttccaatagatgaatatttaaaagtatgt
acatcaattgatgatataaaaaaagaaatagagtatatagaaaaaataagatttgattta
aattatgatattgatggtttggtaatagctatagatgatattagaacaagagaattatta
ggttatacagttaaataccctaaatgggcaatcgcttataaattcgaagcgcaagaagct
acaacaaaacttttagatgttgaatggaatgttggaagaagtggaagaataggtccaaca
gcaatattagaacctgtagaattagcaggagtaactgttaaaagagcaactcttaataat
atggatgatataaaaagaaaaggtgtaagaatcggagctgatgtatttgttagaagatct
aacgatgttataccagaaattatgggaacactagaaaatacattagaaaattctgaagaa
atatgtccaccaactgaatgtccagcatgtggtagtcacgtggttttaaatggagcacat
tatttttgtgaaaatacactttcttgtaagccacagttagtaaaaaccatagttcattat
gcatcaagagatgctatgaatatagcaggattttcagaaaaaacagcagaacaattattt
gaaaaattaaatattaaatctatttcagatttatataaattaaaaaaagaagacttaata
aacttagagaaatttggagaaaaaaaatcagaaaatttattaaatgcaattgaaaagagt
aaagattgtaagttatattcatttatatatgctttaggaattcctaatgtaggagtgaaa
acagctaaggatattgtaaataaatttaaatcaatagatggattaaaaaatgctacattt
gaagaattagtgtcagttcaagatgttggtgatatagttgcacaggatgtaattgaattc
tttaaagaagaaaaagtaataaatactattgatgaattattaaatttaggagtgaatcct
atatttgatgaagttaaaatagtagaaagtatttttaaagataaaactgtagttactact
ggtacattacaaaattattctagaactgaaataaaaactaagctagaaagtttaggtgct
aaagtttcaggcagtgtaagtaaaaaaacagattatgtaatagctggagaatcagcagga
tcaaaattaactaaagcagaagaacttggagttaaaattatttccgaagaagaatttgaa
aaaatgttgggacgtgaaagttaa
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