Clostridium botulinum A3 Loch Maree: CLK_2687
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Entry
CLK_2687 CDS
T00670
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cbl
Clostridium botulinum A3 Loch Maree
Pathway
cbl03030
DNA replication
cbl03410
Base excision repair
cbl03420
Nucleotide excision repair
cbl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cbl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CLK_2687 (ligA)
03410 Base excision repair
CLK_2687 (ligA)
03420 Nucleotide excision repair
CLK_2687 (ligA)
03430 Mismatch repair
CLK_2687 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cbl03032
]
CLK_2687 (ligA)
03400 DNA repair and recombination proteins [BR:
cbl03400
]
CLK_2687 (ligA)
Enzymes [BR:
cbl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CLK_2687 (ligA)
DNA replication proteins [BR:
cbl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CLK_2687 (ligA)
DNA repair and recombination proteins [BR:
cbl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CLK_2687 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CLK_2687 (ligA)
MMR (mismatch excision repair)
DNA ligase
CLK_2687 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CLK_2687 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
HHH
PTCB-BRCT
DNA_pol_lambd_f
RNA_ligase
5_3_exonuc
DNA_ligase_ZBD
Nlig-Ia
BRCT_2
ILEI
DUF7501
Zn_ribbon_PADR1
Motif
Other DBs
NCBI-ProteinID:
ACA56923
UniProt:
B1L1H3
LinkDB
All DBs
Position
complement(3551980..3553974)
Genome browser
AA seq
664 aa
AA seq
DB search
MDNKLEKMKELVEELNQYAYEYYVLDNPSISDKEYDLKYDELVILEKKTEVTLPYSPTQR
VGDKILGEFSKYTHKGRLWSLDKAQNMEQLIEWHNRNLKVIEQYNSMSEDKLPELRYIVT
KKFDGLTVNCTYDENGILIKSATRGTGIIGEDITAQIKTIKTVPLKIKNNHIIEVHGEAI
MTKTAFEEYNKAAQVPLKNLRNGAAGALRNLDIKETARRNLSAFFYDVGYNEGSEFKNYR
EMMNFIRNMGLPQDKYIKECTNMEEVEKEIEYIESIREELDYDIDGAVIVVDDIKTREIL
GYTIKFPKWAIAYKFEAKEITTRLLDVEWNVGRSGRVTPTALLEPVELGGVTVKRATLNN
MDDIKRKNVKLGAKVLVRRSNDVIPEIMGVAEESLEESKEIQAPDRCPYCNSHLVQNGVH
YYCENTLSCKPQMVKSIVHFASREAMNIAGFSEKTAEQLFEKLDIKSIADLYKIKKEELL
TLEKFKDKKSQNLINAIQNSKNCDLASFIYALGIPNVGKKTANDLVMKFKTLESIKNTTI
EQLVEVPDVGEIVAKSIYDFFEDEKIISNIEELLNLGVKPYYEEERIDENPFMDKTIVVT
GSLNNYSRGEIKDKLQSLGAKVSSSVSKNTDYVLVGEKPGSKYEKAIELGVKVINEEEFS
NKIK
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atggataacaagttagaaaaaatgaaggaacttgtagaagaattaaatcagtatgcctat
gagtattatgtattagataatcctagtatatctgataaagaatatgatttgaaatatgat
gaattagtaattttggagaagaaaactgaagttacattaccttattcaccaacccaaagg
gttggtgataaaatattaggtgaatttagtaaatatactcacaaaggaagactttggagt
ttggataaagcccaaaatatggagcaattaatagagtggcataatagaaatttaaaagtt
atagagcaatataattctatgagtgaagataaattaccagagttgagatatatagttact
aaaaaatttgatggattaacggtaaattgtacctatgatgaaaatggaattttaataaaa
agtgctacaagggggacgggaattataggtgaagatataacagctcaaataaaaactata
aagacagttccattaaaaataaaaaataaccacattatagaagtgcatggagaagccata
atgactaaaacagcttttgaagaatataataaagctgctcaagttccactaaagaattta
agaaatggagcagcaggggctcttagaaatttagatattaaagaaactgctagaaggaat
ttatccgcatttttttatgatgtaggttataatgaaggttcggaatttaaaaattataga
gaaatgatgaattttataagaaatatgggattgcctcaggataagtatattaaagaatgt
actaacatggaggaagtggaaaaagaaattgaatatatagaatccataagagaagaactg
gattatgatatagatggggcagtaattgttgtagatgatattaaaacaagagagatatta
ggatatactataaaattccccaaatgggctatagcttataaatttgaagctaaggaaatt
actacaaggcttctagatgtagaatggaatgtaggaagaagcggaagagttactccaaca
gctttattagaacccgtagaactaggtggagtcacagtaaaaagagctacactaaataat
atggatgatattaagagaaaaaatgtaaaattgggtgctaaggttttagttagaagatct
aatgatgttataccggagataatgggagtagcagaagaatctttagaggaaagtaaggaa
atacaggcaccagatagatgtccttattgtaatagccatctagtacaaaatggagtacat
tattattgtgagaatacattatcttgtaaaccacagatggtaaaaagtatagtgcatttt
gctagtagagaagctatgaatatagcaggattcagtgaaaaaactgcagaacaacttttt
gaaaaattagatataaaatctatagcagatttgtataagataaaaaaagaagaactatta
actttagaaaaatttaaggataaaaagtctcaaaatcttataaatgctatacaaaatagc
aaaaattgtgatttggcatcctttatatacgctttaggtatacctaatgtaggtaaaaag
actgcaaatgatttagtaatgaaatttaaaactttagaatctataaagaatacaacaata
gaacaattagtagaagttccagatgtgggagaaatagtagctaagagcatatatgatttt
tttgaagacgaaaaaattataagtaacatagaagaattattaaatttgggtgtaaaacct
tattatgaagaagaaagaattgatgaaaatccttttatggataaaactatagttgtaaca
ggaagtttgaataattatagtagaggggaaataaaagataaattacagtctttaggagct
aaagtttctagtagtgtaagtaaaaatacagactatgtcttagtgggggaaaaaccagga
tctaaatatgaaaaagcaattgaattaggagtaaaagtaatcaacgaagaagaattttct
aataaaattaaataa
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