Campylobacter blaseri: CBLAS_0655
Help
Entry
CBLAS_0655 CDS
T06820
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cbla
Campylobacter blaseri
Pathway
cbla03030
DNA replication
cbla03410
Base excision repair
cbla03420
Nucleotide excision repair
cbla03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cbla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CBLAS_0655 (ligA)
03410 Base excision repair
CBLAS_0655 (ligA)
03420 Nucleotide excision repair
CBLAS_0655 (ligA)
03430 Mismatch repair
CBLAS_0655 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cbla03032
]
CBLAS_0655 (ligA)
03400 DNA repair and recombination proteins [BR:
cbla03400
]
CBLAS_0655 (ligA)
Enzymes [BR:
cbla01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CBLAS_0655 (ligA)
DNA replication proteins [BR:
cbla03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CBLAS_0655 (ligA)
DNA repair and recombination proteins [BR:
cbla03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CBLAS_0655 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CBLAS_0655 (ligA)
MMR (mismatch excision repair)
DNA ligase
CBLAS_0655 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CBLAS_0655 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
PTCB-BRCT
Nlig-Ia
HHH_5
DNA_ligase_ZBD
Cauli_DNA-bind
BRCT_2
TcaA_2nd
SeqA_N
DUF4796_N
BTHB
Motif
Other DBs
NCBI-ProteinID:
QKF85847
LinkDB
All DBs
Position
643694..645637
Genome browser
AA seq
647 aa
AA seq
DB search
MKKDDYLKAVETLNLWAKAYYTDDNPLASDEEYDRLYHSVIEFEKENPNEILSYSPTQKI
GGAISEGFNKLAHINQMWSMEDVFSESELVAWINRGDKSKEVFYCEPKFDGASLNLFYEG
GILKSAITRGDGVIGEEITQNAKVINSIPLQISYKGRIEIRGEVVIAKNDFDSLNEQRAK
NGEPLLANPRNAAAGSLRQLDSKITASRKLKFIPWGVGYNELDFRTHLQTMDFVRELGFL
RDSFVRICKNKDEVMEAYNELLSKRDFKDIMMDGMVVRVDSLDKSINLGYTVKFPRFMVA
FKFPAIEKVTKLKDIALQVGRSGVVTPVGVLEPVLIEGAMIKNATLHNFDEIERLGLMKG
DYVNIIRSGDVIPKITSVYKDRRDGAQKQINRPEFCPVCGSKLHYEEIFVVCQNIDCKAR
IVNSLIYFASKKCMDIDGLGEAIVKTLYKEGKIVKIIDIYRLKFEDLDGLEGFRDKKISN
LLNAIENSKTNELYRFITALGIEHIGEVAAKKISNHFKDNWLNASYDEVLGLDGFGEAMA
KSYIDFIDTNAEHIKELLKYLTLQIPKLEIKQSAFSDKTVVITGTLSKSRDFYKDELEKM
GAKVANSVSKKTDYLLCGENAGSKLEKAKELGVKIIGEDEYKELSES
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaagatgattatttaaaagcggttgaaacgctaaatttatgggcaaaagcctat
tatacagatgataatccattagctagtgatgaagagtatgacaggctttatcatagtgtt
attgagtttgaaaaagaaaatccaaatgagattttaagttattcaccaacccaaaaaata
ggtggtgctataagtgaaggttttaataagttagcacacataaaccaaatgtggtcaatg
gaagatgtttttagtgaaagtgagctagttgcttggataaatagaggcgataaaagcaaa
gaggtgttttactgtgagcctaaatttgatggagcgagtttaaatttgttttatgaaggt
ggaatccttaaaagtgccattacaaggggagatggagtaattggggaagagataactcaa
aacgctaaggttataaactccataccgcttcaaatttcatataaaggcaggattgaaatt
cgtggagaggttgtaattgctaaaaatgattttgatagtttaaatgaacaaagagcaaaa
aatggtgaaccacttttagcaaatcctagaaatgcagccgcaggaagtttaagacagctt
gatagcaaaataacagcaagtagaaaacttaagtttataccttggggagttggatataat
gaacttgattttagaacacatttacaaactatggattttgtaagagagcttggcttttta
agagatagctttgttagaatttgcaaaaacaaagatgaagttatggaagcttacaatgaa
cttttatctaaacgagactttaaagatataatgatggatggaatggttgtaagagttgat
agtttagataaatcaataaatttaggctacacagttaaatttccgcgttttatggtggct
tttaaatttccagctattgaaaaggttacaaaactcaaagatattgcgcttcaagttgga
agaagtggagttgtaacacctgttggagtattagagcctgttttgattgagggtgcaatg
ataaaaaatgcaacacttcataactttgatgagatagagcgtcttggacttatgaaaggg
gattatgtaaatatcataagaagtggtgatgttataccaaagattacaagtgtgtataaa
gatagaagagatggggcacaaaagcaaataaatcgtccagagttttgtcctgtttgtgga
tcaaaacttcattatgaagagatatttgtagtatgtcaaaacattgattgcaaggcaaga
attgtaaactcacttatatattttgcatctaaaaagtgtatggatatagatgggcttgga
gaggcgattgtaaaaactctttataaagagggtaagatagttaagattatagatatttat
aggcttaaatttgaagatttagatgggcttgagggctttagagataaaaaaatatcaaat
ttactaaatgctattgaaaactcaaaaacaaatgaactttatagatttataacagctctt
gggatagagcatataggcgaagttgcagctaagaaaatatcaaaccattttaaagataac
tggttaaatgcaagttatgatgaggttttaggtcttgatggctttggtgaagctatggct
aaaagctatatcgattttatagatacaaatgctgagcatataaaagagcttttaaaatat
ctaacacttcaaattccaaagcttgagataaaacagagtgcatttagtgataaaacagtg
gttataacaggaacccttagcaaaagcagggatttttataaagatgaactagaaaaaatg
ggggcaaaagttgcaaactctgtatctaaaaaaacagattatttgctttgtggggaaaat
gcaggaagtaaattggaaaaagctaaagagctaggagttaaaataataggtgaagatgaa
tacaaggagctaagtgagagctga
DBGET
integrated database retrieval system
