Candidatus Competibacteraceae bacterium Lyne_18-Q3-R50-59_BATAC.383_cln: IPM89_10215
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Entry
IPM89_10215 CDS
T10208
Symbol
nth
Name
(GenBank) endonuclease III
KO
K10773
endonuclease III [EC:3.2.2.-
4.2.99.18
]
Organism
cbly Candidatus Competibacteraceae bacterium Lyne_18-Q3-R50-59_BATAC.383_cln
Pathway
cbly03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
cbly00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
IPM89_10215 (nth)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cbly03400
]
IPM89_10215 (nth)
Enzymes [BR:
cbly01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
IPM89_10215 (nth)
DNA repair and recombination proteins [BR:
cbly03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
IPM89_10215 (nth)
Prokaryotic type
IPM89_10215 (nth)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HhH-GPD
HHH
EndIII_4Fe-2S
RecR_HhH
HHH_8
HHH_5
Motif
Other DBs
NCBI-ProteinID:
QQS53280
LinkDB
All DBs
Position
2280478..2281116
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AA seq
212 aa
AA seq
DB search
MDAAQVRLLFSRLQAACPKPTTELRYLSPFELLVAVILSAQSTDKKVNEATARLFPLANT
PRALLDLGEAELKAHIKTIGLYNGKAANILKTCALLLERHGGEVPRDRAALEALPGVGRK
TANVILNTAFGEPTIAVDTHIFRVANRTGLAPGKTVRAVEEGLLAATPEEFRHDAHHWLI
LHGRYVCTARKPRCWACPIRDLCAYPDKSEVN
NT seq
639 nt
NT seq
+upstream
nt +downstream
nt
gtggacgccgcacaagttcgtctgctctttagccgcctgcaagccgcctgtcccaagccg
accaccgaactacgttatctcagcccgttcgaattgctggtggcggtgattctgtcggcg
caatcgaccgataagaaggtcaacgaagccaccgcccggctgtttccgcttgccaatacc
ccacgggcgttgctggatttgggcgaggcggaattgaaggcgcacatcaagaccatcggt
ctgtacaacggcaaagccgccaacattctcaagacctgcgcgttattgctggaacggcat
ggcggcgaggtgccgcgtgatcgggcggcgctggaggcgttgccgggcgttggccgcaag
accgccaacgtcatcctcaacaccgccttcggcgaaccgaccatcgcggtcgatactcat
atctttcgggttgccaaccgcaccggactggcgccgggcaaaaccgtgcgggccgtggaa
gaaggcttgctggccgcgacgccggaagagttcaggcacgacgcccatcactggctgatc
ctgcacggccgctatgtctgcaccgcccgcaagccgcggtgttgggcctgcccgatccgc
gatctttgtgcctatcccgacaagagcgaggtgaattga
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