Candidatus Competibacteraceae bacterium Lyne_18-Q3-R50-59_BATAC.383_cln: IPM89_13580
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Entry
IPM89_13580 CDS
T10208
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cbly Candidatus Competibacteraceae bacterium Lyne_18-Q3-R50-59_BATAC.383_cln
Pathway
cbly03030
DNA replication
cbly03410
Base excision repair
cbly03420
Nucleotide excision repair
cbly03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cbly00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
IPM89_13580 (ligA)
03410 Base excision repair
IPM89_13580 (ligA)
03420 Nucleotide excision repair
IPM89_13580 (ligA)
03430 Mismatch repair
IPM89_13580 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cbly03032
]
IPM89_13580 (ligA)
03400 DNA repair and recombination proteins [BR:
cbly03400
]
IPM89_13580 (ligA)
Enzymes [BR:
cbly01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
IPM89_13580 (ligA)
DNA replication proteins [BR:
cbly03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
IPM89_13580 (ligA)
DNA repair and recombination proteins [BR:
cbly03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
IPM89_13580 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
IPM89_13580 (ligA)
MMR (mismatch excision repair)
DNA ligase
IPM89_13580 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
IPM89_13580 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
HHH
Motif
Other DBs
NCBI-ProteinID:
QQS53855
LinkDB
All DBs
Position
3018703..3020733
Genome browser
AA seq
676 aa
AA seq
DB search
MALFTDPQHRAAWLRERLNWHGYRYYVLDDPEIPDAEYDRLFRELQELEVAHPELSAADS
PTRRVGGKPLAAFVPVRHRVPMLSIRTETDTGPDGAAAFDAQVRRELHLGDDAEPVEYAC
ELKFDGLAISLRYEQGVLVLAATRGDGETGEDVTQNVRTIKAVPLRLQGAAPEVLEVRGE
AYMSRADFERYNARQRAAGLPTLVNPRNGAAGSIRQLDPNLAAKRPLSFFAYGLGEVQAW
DIPTTHGAMLDALAALGLPVCEKRVVTRGADGLIAFHRAIAEQRDSLAFDIDGVVYKVNH
LGWQRQLGFRTREPRWAVAHKFPAQEELTVVEAIELQVGRTGAITPVARLKPVFVGGVTV
TNATLHNADEVARKDVRVGDTVIVRRAGDVIPEIVGVVLERRPPDTQPFAMPAICPVCGS
RIIRPEGEAVARCAGGLYCRAQRKEAIRHFASRRAMDIDGLGDKLVEQLIERDLVHDPAD
LYALDATMLAGLERMGTKSATNLIEALELSKVTSLERFLYSLGIREVGEATARALARHLG
TLEALLAADETRLLQVPDVGPVIAAAILAFFQEPHNQEVLARLLAAGVRWPAPVAQTSAG
ESLAGKSFVLTGALESLTRDQASERLRALGAKVAGSVSKKTDYVVAGHDAGSKLDKAREL
GVRVLDEVGLLELLER
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atggcgcttttcaccgatccgcaacatcgggccgcctggttgcgcgagcggctcaactgg
catggctaccgctactacgtgctggacgatccggaaattcccgacgccgagtacgaccgg
ctgtttcgagaactccaggagttggaagtcgcccatccggagttgagcgccgccgattct
ccgacccggcgggtgggtggcaaaccgctggctgcattcgtaccggtgcggcatcgggta
ccgatgctgtccatccgtaccgaaaccgacaccggcccggacggcgcggcggcctttgat
gcccaggtacggcgcgagctgcacctgggcgatgatgcggaaccggtcgagtacgcctgc
gagttgaaattcgacggcctggccatcagcctgcgctatgaacagggcgtactggtgctg
gcggccacccgcggcgatggcgagactggcgaggacgtcactcagaatgtgcgcaccatc
aaggccgtgccgctccggctgcaaggcgccgcgcccgaggtcttggaagtacgcggtgaa
gcgtacatgagccgcgcggatttcgaacgctacaacgcccggcagcgcgccgccgggtta
cccaccctggtcaatccccgcaacggcgcggcgggcagcatccggcaactcgacccgaat
ctggccgcgaaacggccgctgtctttttttgcctacgggttgggcgaggtgcaagcttgg
gatatcccgaccacgcatggcgcgatgcttgacgcactggccgcgctgggattgcccgtg
tgtgaaaaacgtgtggtgacgcggggcgcggacggcctgatcgcgtttcaccgggccatc
gccgagcaacgcgactcgttagccttcgatatcgacggcgtggtgtacaaggtcaaccac
cttggctggcaacggcaactgggttttcgcacccgcgaaccgcgctgggcggtggcacac
aaatttccggctcaggaagagctgaccgtggtcgaggccattgagctacaggttggccgc
accggcgcgatcaccccggtggcgcggctcaaaccggtgtttgtcggtggcgtcaccgtc
accaatgcgacgctgcacaacgccgatgaggtggcgcgcaaggacgtgcgggtaggcgat
accgtcatcgtgcgccgggctggcgacgtcattcccgaaattgtcggcgtggtgctggag
cgccggccgcccgacacgcaaccattcgcgatgccagccatctgcccggtatgcgggtcg
cggattatccgcccggaaggagaagcggtcgctcgctgcgctggcggtctgtattgccgt
gcccagcgcaaggaggcgatccgtcatttcgcctcgcgccgggcgatggatatcgacgga
ctgggcgacaagttggtggagcaactgatcgagcgggacctggtgcatgatcccgccgat
ttgtacgcgctcgatgcgacgatgctggccggtctggaacggatgggcaccaaatccgcc
accaatctgatcgaagcactggaactcagcaaggtcacctcgctggaacgattcctgtat
tcgttgggaatccgtgaggttggggaagccacggcgcgggctttggcgcggcatttgggt
acgctggaagcactgctggcggccgatgaaacccgtttgctgcaagtgccagacgtcggt
ccggtgattgccgccgccattcttgccttctttcaggagcctcacaaccaggaagtactg
gctcggttactggccgctggggtacggtggccagcgccggtcgcgcaaaccagtgccggg
gaatccctggcgggcaaaagcttcgtgctgaccggtgccttggagtcgctaactcgcgat
caggcatccgaacgattgcgggcgctgggcgccaaggtggcgggcagcgtgtcgaagaaa
accgattacgtggtggcgggtcacgacgccggttccaaattggacaaggcgcgggaattg
ggggtgcgggtgctggatgaggtggggctgctggagctgctggagagatag
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integrated database retrieval system
