Clostridium botulinum F 230613: CBF_3422
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Entry
CBF_3422 CDS
T01865
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cbm
Clostridium botulinum F 230613
Pathway
cbm03030
DNA replication
cbm03410
Base excision repair
cbm03420
Nucleotide excision repair
cbm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cbm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CBF_3422 (ligA)
03410 Base excision repair
CBF_3422 (ligA)
03420 Nucleotide excision repair
CBF_3422 (ligA)
03430 Mismatch repair
CBF_3422 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cbm03032
]
CBF_3422 (ligA)
03400 DNA repair and recombination proteins [BR:
cbm03400
]
CBF_3422 (ligA)
Enzymes [BR:
cbm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CBF_3422 (ligA)
DNA replication proteins [BR:
cbm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CBF_3422 (ligA)
DNA repair and recombination proteins [BR:
cbm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CBF_3422 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CBF_3422 (ligA)
MMR (mismatch excision repair)
DNA ligase
CBF_3422 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CBF_3422 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
HHH
PTCB-BRCT
5_3_exonuc
DNA_pol_lambd_f
RNA_ligase
DNA_ligase_ZBD
Nlig-Ia
BRCT_2
ILEI
DUF7501
Zn_ribbon_PADR1
Motif
Other DBs
NCBI-ProteinID:
ADG00981
LinkDB
All DBs
Position
complement(3566712..3568706)
Genome browser
AA seq
664 aa
AA seq
DB search
MDNKLEKMKELVEELNQYAYEYYVLDNPSISDKEYDLKYDELVILEKKTEVTLPYSPTQR
VGDKILGEFSKYTHKGRLWSLDKAQNMEQLIEWHNRNLKVIEQYNSMSEDKLPELRYIVT
KKFDGLTVNCTYDENGILIKSATRGTGIIGEDITAQIKTIKTVPLKIKNSYVIEVHGEAI
MTKTAFEEYNKAAQVPLKNLRNGAAGALRNLDIKETARRNLSAFFYDVGYNEGPEFKSYR
EMMNFIRNMGLPQDKYIKECTNMEEVEKEIEYIESIRGELDYDIDGAVIVVDDIKTREIL
GYTIKFPKWAIAYKFEAKEITTKLLDVEWNVGRSGRVTPTALLEPVELGGVTVKRATLNN
MDDIKRKNVKLGAKVLVRRSNDVIPEIMGVVEESLEESEEIQAPDRCPYCNSHLVQNGVH
YYCENTLSCKPQMVKSIVHFASREAMNIAGFSEKTAEQLFEKLDIKSIADLYKIKKEELL
TLEKFKDKKSQNLIDAIQNSKNCDLASFIYALGIPNVGKKTANDLVMKFKTLESIKNTTI
EQLVEVPDVGEIVAKSIYDFFEDEKIISNIEELLNLGVKPYYEEERIDENPFMDKTIVVT
GSLNNYSRGEIKDKLQSLGAKVSSSVSKNTDYVLVGEKPGSKYEKAIELGVKVINEEEFS
NKIK
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atggataacaagttagaaaagatgaaggaacttgtagaagaattaaatcagtatgcctat
gagtattatgtattagataatcccagtatatctgataaagaatatgacttgaaatatgat
gaattagtaattttggagaagaaaactgaagttacattaccttattcaccaacccaaagg
gttggtgataaaatattaggtgaatttagtaaatatactcacaaaggaagactctggagt
ttggataaagcccaaaatatggagcagttaatagagtggcataatagaaatttaaaagtt
atagagcaatataattctatgagtgaagataaattaccagagttgagatatatagttact
aaaaaatttgatggattaacggtaaattgtacctatgatgaaaatggaattttaataaag
agtgctacaaggggaacgggaattataggtgaagatataacagctcaaataaaaactata
aagacagttccattaaaaataaaaaatagctacgttatagaagtgcatggagaagccata
atgactaaaacagcttttgaagaatataataaagctgctcaagttccgctaaaaaattta
agaaatggagcagcaggagctcttagaaatttagatattaaagaaactgctagaaggaat
ttatccgcatttttttatgatgtaggctataatgaaggtccggaatttaaaagttataga
gaaatgatgaattttataagaaatatgggattgcctcaggataagtatattaaagaatgt
actaacatggaagaagtggaaaaagaaattgaatatatagaatccataagaggagaacta
gattatgatatagatggagcagtaattgttgtagatgatattaaaacaagagagatatta
gggtatactataaaattccccaaatgggctatagcttataaatttgaagctaaggaaatt
actacaaagcttctagatgtagaatggaatgtaggaagaagcggaagagttactccaaca
gctttattagaacccgtagaactaggcggagtcacagtaaaaagagctacactaaataat
atggatgatattaagagaaaaaatgtaaaattgggtgctaaggttttagttagaagatct
aacgatgttataccagagataatgggagtagtagaagaatctttagaggaaagcgaggaa
atacaggcgccagatagatgtccttattgtaatagccatctagtacaaaatggagtacat
tattattgtgagaatacattatcttgtaagccacagatggtaaaaagtatagtgcatttt
gctagtagagaagctatgaatatagcaggattcagtgaaaaaactgcagaacaacttttt
gaaaaattagatataaaatctatagcagatttgtataagataaaaaaagaagaactatta
actttagaaaaatttaaggataaaaagtctcaaaatcttatagatgctatacaaaatagc
aaaaattgtgatttggcatcctttatatacgctttaggtatacctaatgtaggtaaaaag
actgcaaatgatttagtaatgaaatttaaaactttagaatctataaagaatacaacaata
gaacaattagtagaagttccagatgtgggagaaatagtagctaagagcatatatgatttt
tttgaagacgaaaaaattataagtaacatagaagaattattaaatttgggtgtaaaacct
tattatgaagaagaaagaattgatgaaaatccttttatggataaaactatagttgtaaca
ggaagtttgaataattatagtagaggggaaataaaagataaattacagtctttaggagct
aaagtttctagtagtgtaagtaaaaatacagactatgtcttagtaggggaaaaaccagga
tctaaatatgaaaaagcaattgaattaggagtaaaagtaatcaacgaagaagaattttct
aataaaattaaataa
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