Clostridium botulinum BKT015925: CbC4_2187
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Entry
CbC4_2187 CDS
T01475
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cbn
Clostridium botulinum BKT015925
Pathway
cbn03030
DNA replication
cbn03410
Base excision repair
cbn03420
Nucleotide excision repair
cbn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cbn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CbC4_2187 (ligA)
03410 Base excision repair
CbC4_2187 (ligA)
03420 Nucleotide excision repair
CbC4_2187 (ligA)
03430 Mismatch repair
CbC4_2187 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cbn03032
]
CbC4_2187 (ligA)
03400 DNA repair and recombination proteins [BR:
cbn03400
]
CbC4_2187 (ligA)
Enzymes [BR:
cbn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CbC4_2187 (ligA)
DNA replication proteins [BR:
cbn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CbC4_2187 (ligA)
DNA repair and recombination proteins [BR:
cbn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CbC4_2187 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CbC4_2187 (ligA)
MMR (mismatch excision repair)
DNA ligase
CbC4_2187 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CbC4_2187 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
PTCB-BRCT
HHH
5_3_exonuc
BRCT_2
DNA_ligase_ZBD
RNA_ligase
Nlig-Ia
RNA_pol_A_CTD
HHH_3
RNA_lig_T4_1
DUF7501
DisA-linker
Motif
Other DBs
NCBI-ProteinID:
AEB76852
LinkDB
All DBs
Position
complement(2374535..2376526)
Genome browser
AA seq
663 aa
AA seq
DB search
MEGKKQQIYKLVDELNKLAYEYYVLDNPSVADKDYDKKYDELVQLEKQTGMMLPYSPTQR
VGDMVLAKFEKYTHKGKLWSLGKAQSLEEVKDWHNKNIKAINEYNLKHEDKLPPIKYIVT
KKFDGLTINCTYDNEGILVTAATRGTGEIGEDITAQAKTIKTLPLKINNNALIEVHGEAI
MTKEAFEEYNKIAQVPLKNLRNGAAGALRNLNIKETARRNLSAFFYDVGYNEGKPFETYS
EMLKFIKEQGIPMDDYVKTCSTVEEIEEEIKYIEEIRNDLNYDIDGIVIAIDDMKSRELI
GYTVKFPKWALAYKFEAQEATTKLIDVEWNVGRSGRVTPTAILEPVEIGGVTVKRATLNN
MDDINRKGVKLGSVVFLRRSNDVIPEIMGVVENSTEDTKEIKTPEVCPYCGSEIVQEGVH
YFCENTLSCKPQLVKSIVHFGSREAMNIAGFSEKTAGQLFEELDIKSISDLYRIKKEELL
NLQRFGEKKAQNLIDAIEKSKNCDLPSFIYALGIPNVGKKTSTDLCKKFKTLKNLKSATF
DDLISVEDIGDIVAESIMEFFKDDTILKSIDELLELGVNPEFQEEEIQENIFNGKTVVVT
GSLNSFSRSEIKEKLQSLGAKVSSSVSKKTDYVIVGKDPGSKYEKAVELNVKIIDEDEFK
NMI
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atggaagggaaaaaacaacaaatttataagttggttgatgaacttaataaattagcttat
gaatattatgttttagataatccgagtgtagctgataaggattacgacaaaaaatatgat
gaattagtacaacttgaaaaacaaacagggatgatgcttccttattcaccaacgcagagg
gttggtgatatggttctagcaaagtttgaaaaatatactcataagggtaagctctggagt
cttggaaaagctcaaagcttagaagaggtaaaggattggcataataaaaatattaaagct
attaatgaatataatttaaagcatgaagataaactgccacctattaaatatattgttact
aaaaagtttgatgggcttactataaattgtacatatgataatgagggaatattggttact
gctgcaactagaggaactggtgaaataggagaagatattacagcacaagcaaaaactata
aaaacattgccacttaaaataaataataatgctttaattgaagttcatggtgaggccata
atgacaaaagaagcctttgaagaatataataaaatagcacaggttcctttaaaaaattta
agaaatggtgctgctggagctcttagaaatttaaatataaaagaaacggcaagaagaaat
ctttcagcttttttctatgatgtaggctataatgaaggaaaaccttttgaaacttatagt
gaaatgttaaagtttataaaagaacaaggaatacctatggatgactatgtaaaaacatgt
tctactgtagaagaaatagaagaagaaattaagtatatagaagaaataagaaatgattta
aattatgatatagatggtatagtaattgcaattgatgatatgaagagtagagaacttata
ggatatacagtcaagtttcctaaatgggctcttgcatataaatttgaagctcaagaagct
acaacaaaattgatagatgtagaatggaatgtaggaagaagtggaagggttacccctaca
gcaatattagaaccagtagaaataggaggggttactgtaaaaagagcaactcttaataat
atggatgatataaatagaaaaggggttaaactaggaagtgtagtatttcttcgtcgttca
aatgatgtaattccagaaataatgggagttgtagaaaattcaacagaagatactaaagaa
ataaaaacaccagaagtatgtccttattgtggaagtgaaatagttcaagaaggtgttcat
tacttttgcgaaaatactttatcttgtaagcctcaacttgtaaaatctattgttcatttt
ggaagtagagaagccatgaatatagctggatttagtgaaaaaacagcaggacagttattt
gaagaattagatataaaatctatatcggatttatacagaataaaaaaagaagaattatta
aatctacaacgttttggagaaaaaaaagcccaaaatttaattgatgctatagaaaaaagt
aaaaactgtgatttaccttcatttatatatgcacttggaattcctaatgtaggtaaaaaa
actagtactgatttatgtaaaaagttcaaaactttaaaaaatttgaaaagtgctacattt
gatgatcttatatctgtagaagatataggtgatattgtagctgaaagtataatggaattt
tttaaggatgatacgattttaaaaagtatagatgaacttttagagttaggtgtaaatcct
gaattccaagaagaagagatacaagagaatatatttaatggaaaaaccgtagttgtaaca
gggtcattaaattcttttagtagaagtgaaataaaagaaaagcttcagtcattaggagca
aaagtatcaagtagcgtaagtaaaaagactgattatgttatagttggtaaagacccgggt
tcaaaatatgaaaaagccgttgaacttaatgttaaaatcattgatgaagacgagtttaaa
aacatgatatga
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