KEGG   Enterocloster bolteae: CGC65_01000
Entry
CGC65_01000       CDS       T05466                                 
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
cbol  Enterocloster bolteae
Pathway
cbol03030  DNA replication
cbol03410  Base excision repair
cbol03420  Nucleotide excision repair
cbol03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cbol00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CGC65_01000
   03410 Base excision repair
    CGC65_01000
   03420 Nucleotide excision repair
    CGC65_01000
   03430 Mismatch repair
    CGC65_01000
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cbol03032]
    CGC65_01000
   03400 DNA repair and recombination proteins [BR:cbol03400]
    CGC65_01000
Enzymes [BR:cbol01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     CGC65_01000
DNA replication proteins [BR:cbol03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     CGC65_01000
DNA repair and recombination proteins [BR:cbol03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     CGC65_01000
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     CGC65_01000
   MMR (mismatch excision repair)
    DNA ligase
     CGC65_01000
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      CGC65_01000
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB BRCT PTCB-BRCT HHH_2 Nlig-Ia Ogr_Delta BRCT_2 NUFIP1
Other DBs
NCBI-ProteinID: ASN93348
LinkDB
Position
complement(200516..202615)
AA seq 699 aa
MRRERRKNYLSNTFNDNKKIMEAHMKQNQNEHLSQEAIRIHHLVKQLNQYRHEYYNMNAP
SVSDAVYDCLFDELDALEKRTGIILSNSPTQTVGYQAVSQLDKVHHPIPLLSLDKTKQIT
EIHDFMKKQKSLLMLKLDGLTIKLTYENGRLIEASTRGDGDEGEIVTHNASAFRNIPLSI
PYQKRLVISGEAFIHIHDFERLQNTLLDSNGNPYRNARNLAAGSARCLDANICKERSVSF
YAFHVLEGLDESSELSKSREARLTALHPLGFDICPFLVLSSEASLETLNEAMATLRDLAS
ELDIPIDGLVLRYDDLPYSVACGRTGRFYKDGKAFKFEDDTFKTIFRSIEWQTGRTGEIA
PVALFDPIEIDGSTVSRASLHNLTFIQDLELYPGCRILVSKRNMIIPHIEENLDRGHYQD
MTPRTCPCCGSPTRIYSRSSGSERIVQTLHCDNPNCSQQILQRFVHFCEKKAMNIIGISE
ATLKQFIDLGFLKCFQDIYHLDRFSDQIADMDGFGKKSYERLWNSINESRNTTFVRYLVA
MDIPMIGRTASRKLEQYFHGNLLELELAAMSRFDFTCLEDFGETMSSNIIEWFHDRENLT
LWRNLQKEMHFKEREETIMTETKNNPFAGCTIVATGKLENFTRDSINSKIISLGATAGSS
VTKKTDYLICGEKAGSKLAKAQQLGVKVLSEQEFLNMIA
NT seq 2100 nt   +upstreamnt  +downstreamnt
atgcggcgggaaaggaggaagaattatctttcaaacacattcaatgacaataaaaaaata
atggaggcgcatatgaaacaaaatcaaaatgaacatctctcccaggaggcaatacgcatt
catcatctggtgaaacagctcaaccagtaccggcacgaatactacaacatgaatgctccc
agtgtatccgatgcagtctatgattgtcttttcgatgaattagatgcattagaaaaacga
accggaattatcctgagtaattctccgacacagaccgtcggatatcaagctgtcagtcag
ttagacaaagtacaccatccgataccactgctctctcttgacaaaacaaaacagataaca
gaaatccatgattttatgaaaaagcagaaatcccttcttatgctgaagctggatggactt
accatcaagctcacatatgaaaatggccggctcattgaggcttctacaagaggcgatggc
gatgaaggagaaatcgttacccacaatgcttcggctttccggaatattcctttatctatt
ccttaccagaaacgtcttgttataagtggagaagcatttatccacattcatgacttcgaa
cggctgcaaaataccctattggacagcaatggaaacccttaccgaaacgccagaaatctg
gccgccggctctgctcgctgtctggatgccaatatctgcaaagaacgttctgtttccttc
tatgcatttcatgttctggaaggactggacgaatcttcggagctttcaaaaagccgcgaa
gcacgccttacagcattacatcctctgggattcgacatctgtccttttctggtactttca
tcagaagcatcccttgaaacactgaatgaagccatggcaacgctccgtgatctggcttct
gaactggatattcccattgacggcctggttctccgatatgatgacctgccttactctgtc
gcctgcgggcgtaccggacgtttctataaagacggaaaagcttttaaatttgaagatgat
acatttaaaaccatttttcgttcgattgaatggcagactggacgaaccggagagattgct
cccgtggcactgtttgatccgattgaaattgacggatctactgtatccagagcaagtctg
cataatctgacatttattcaagatctggaactctatcccggatgtcggattctggtatcc
aaacgaaatatgattattccccatatcgaagaaaacttagatcgcggccactatcaggat
atgacacccagaacatgcccctgctgcggcagtcctacccgtatctattccagaagttcc
ggttcggaacggattgtacagacactacactgcgataacccaaactgcagccagcagatt
cttcagcgctttgttcacttctgtgaaaagaaagctatgaatatcatcggtatttctgaa
gccaccttaaaacagtttattgacctgggctttctgaaatgctttcaggatatttatcac
ctggatcgcttttcagatcaaattgctgatatggacggattcggtaaaaaatcctatgaa
cggctctggaactccattaacgaaagccgcaataccacctttgtccgttatctggttgcc
atggatattcccatgatcggcagaactgccagccggaaactggaacaatactttcacgga
aatcttttggaactggagcttgcagctatgagccgatttgactttacctgcctggaagac
tttggtgaaactatgagcagcaatattatcgaatggttccatgaccgtgaaaatcttacc
ttatggagaaacttacaaaaagaaatgcactttaaagaaagagaggaaactatcatgaca
gaaactaaaaataacccatttgcaggatgtaccatcgtagcaaccggaaagcttgaaaac
tttacccgtgacagcattaacagcaagatcatcagcttaggcgccaccgccggaagctcc
gtcacaaagaaaaccgattacctgatctgcggagaaaaagccggcagcaaactggcgaag
gcacagcagcttggggtaaaggttctgagcgaacaggaatttttaaatatgattgcataa

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