Enterocloster bolteae: CGC65_01000
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Entry
CGC65_01000 CDS
T05466
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cbol
Enterocloster bolteae
Pathway
cbol03030
DNA replication
cbol03410
Base excision repair
cbol03420
Nucleotide excision repair
cbol03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cbol00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CGC65_01000
03410 Base excision repair
CGC65_01000
03420 Nucleotide excision repair
CGC65_01000
03430 Mismatch repair
CGC65_01000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cbol03032
]
CGC65_01000
03400 DNA repair and recombination proteins [BR:
cbol03400
]
CGC65_01000
Enzymes [BR:
cbol01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CGC65_01000
DNA replication proteins [BR:
cbol03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CGC65_01000
DNA repair and recombination proteins [BR:
cbol03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CGC65_01000
NER (nucleotide excision repair)
GGR (global genome repair) factors
CGC65_01000
MMR (mismatch excision repair)
DNA ligase
CGC65_01000
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CGC65_01000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
PTCB-BRCT
HHH_2
Nlig-Ia
Ogr_Delta
BRCT_2
NUFIP1
Motif
Other DBs
NCBI-ProteinID:
ASN93348
LinkDB
All DBs
Position
complement(200516..202615)
Genome browser
AA seq
699 aa
AA seq
DB search
MRRERRKNYLSNTFNDNKKIMEAHMKQNQNEHLSQEAIRIHHLVKQLNQYRHEYYNMNAP
SVSDAVYDCLFDELDALEKRTGIILSNSPTQTVGYQAVSQLDKVHHPIPLLSLDKTKQIT
EIHDFMKKQKSLLMLKLDGLTIKLTYENGRLIEASTRGDGDEGEIVTHNASAFRNIPLSI
PYQKRLVISGEAFIHIHDFERLQNTLLDSNGNPYRNARNLAAGSARCLDANICKERSVSF
YAFHVLEGLDESSELSKSREARLTALHPLGFDICPFLVLSSEASLETLNEAMATLRDLAS
ELDIPIDGLVLRYDDLPYSVACGRTGRFYKDGKAFKFEDDTFKTIFRSIEWQTGRTGEIA
PVALFDPIEIDGSTVSRASLHNLTFIQDLELYPGCRILVSKRNMIIPHIEENLDRGHYQD
MTPRTCPCCGSPTRIYSRSSGSERIVQTLHCDNPNCSQQILQRFVHFCEKKAMNIIGISE
ATLKQFIDLGFLKCFQDIYHLDRFSDQIADMDGFGKKSYERLWNSINESRNTTFVRYLVA
MDIPMIGRTASRKLEQYFHGNLLELELAAMSRFDFTCLEDFGETMSSNIIEWFHDRENLT
LWRNLQKEMHFKEREETIMTETKNNPFAGCTIVATGKLENFTRDSINSKIISLGATAGSS
VTKKTDYLICGEKAGSKLAKAQQLGVKVLSEQEFLNMIA
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atgcggcgggaaaggaggaagaattatctttcaaacacattcaatgacaataaaaaaata
atggaggcgcatatgaaacaaaatcaaaatgaacatctctcccaggaggcaatacgcatt
catcatctggtgaaacagctcaaccagtaccggcacgaatactacaacatgaatgctccc
agtgtatccgatgcagtctatgattgtcttttcgatgaattagatgcattagaaaaacga
accggaattatcctgagtaattctccgacacagaccgtcggatatcaagctgtcagtcag
ttagacaaagtacaccatccgataccactgctctctcttgacaaaacaaaacagataaca
gaaatccatgattttatgaaaaagcagaaatcccttcttatgctgaagctggatggactt
accatcaagctcacatatgaaaatggccggctcattgaggcttctacaagaggcgatggc
gatgaaggagaaatcgttacccacaatgcttcggctttccggaatattcctttatctatt
ccttaccagaaacgtcttgttataagtggagaagcatttatccacattcatgacttcgaa
cggctgcaaaataccctattggacagcaatggaaacccttaccgaaacgccagaaatctg
gccgccggctctgctcgctgtctggatgccaatatctgcaaagaacgttctgtttccttc
tatgcatttcatgttctggaaggactggacgaatcttcggagctttcaaaaagccgcgaa
gcacgccttacagcattacatcctctgggattcgacatctgtccttttctggtactttca
tcagaagcatcccttgaaacactgaatgaagccatggcaacgctccgtgatctggcttct
gaactggatattcccattgacggcctggttctccgatatgatgacctgccttactctgtc
gcctgcgggcgtaccggacgtttctataaagacggaaaagcttttaaatttgaagatgat
acatttaaaaccatttttcgttcgattgaatggcagactggacgaaccggagagattgct
cccgtggcactgtttgatccgattgaaattgacggatctactgtatccagagcaagtctg
cataatctgacatttattcaagatctggaactctatcccggatgtcggattctggtatcc
aaacgaaatatgattattccccatatcgaagaaaacttagatcgcggccactatcaggat
atgacacccagaacatgcccctgctgcggcagtcctacccgtatctattccagaagttcc
ggttcggaacggattgtacagacactacactgcgataacccaaactgcagccagcagatt
cttcagcgctttgttcacttctgtgaaaagaaagctatgaatatcatcggtatttctgaa
gccaccttaaaacagtttattgacctgggctttctgaaatgctttcaggatatttatcac
ctggatcgcttttcagatcaaattgctgatatggacggattcggtaaaaaatcctatgaa
cggctctggaactccattaacgaaagccgcaataccacctttgtccgttatctggttgcc
atggatattcccatgatcggcagaactgccagccggaaactggaacaatactttcacgga
aatcttttggaactggagcttgcagctatgagccgatttgactttacctgcctggaagac
tttggtgaaactatgagcagcaatattatcgaatggttccatgaccgtgaaaatcttacc
ttatggagaaacttacaaaaagaaatgcactttaaagaaagagaggaaactatcatgaca
gaaactaaaaataacccatttgcaggatgtaccatcgtagcaaccggaaagcttgaaaac
tttacccgtgacagcattaacagcaagatcatcagcttaggcgccaccgccggaagctcc
gtcacaaagaaaaccgattacctgatctgcggagaaaaagccggcagcaaactggcgaag
gcacagcagcttggggtaaaggttctgagcgaacaggaatttttaaatatgattgcataa
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integrated database retrieval system