Calonectris borealis (Cory's shearwater): 142078045
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Entry
142078045 CDS
T11211
Symbol
RRP8
Name
(RefSeq) ribosomal RNA-processing protein 8 isoform X1
KO
K10260
F-box and WD-40 domain protein 7
Organism
cbor Calonectris borealis (Cory's shearwater)
Pathway
cbor04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
cbor00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
142078045 (RRP8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cbor04131
]
142078045 (RRP8)
04121 Ubiquitin system [BR:
cbor04121
]
142078045 (RRP8)
Membrane trafficking [BR:
cbor04131
]
Autophagy
Mitophagy
Other mitophagy associated proteins
142078045 (RRP8)
Ubiquitin system [BR:
cbor04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
142078045 (RRP8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Methyltransf_8
Beta-prop_WDR5
WD40_Prp19
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40
Beta-prop_IFT122_1st
WD40_WDHD1_1st
WD40_Gbeta
Beta-prop_WDR3_2nd
WD40_CDC20-Fz
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_TEP1_C
Beta-prop_SCAP
WDR55
DSE1_N
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR41
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR75_1st
Beta-prop_EML
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
F-box-like
ANAPC4_WD40
Beta-prop_Nup120_160
Beta-prop_SPT8
Beta-prop_WDR90_POC16_2nd
Beta-prop_DCAF12
ASA1
NBCH_WD40
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_DCAF4
F-box
Beta-prop_Aladin
Beta-prop_RIG_1st
Beta-prop_ACSF4
Methyltransf_11
Beta-prop_NOL10_N
TRM82_WD
CFAP251_N
Beta-prop_VPS8
WD40_MABP1-WDR62_1st
WDR90_beta-prop_4th
PAC11
PQQ_2
Methyltransf_31
Methyltransf_25
Beta-prop_IFT140_2nd
WD40_RFWD3
Beta-prop_NWD2_C
Beta-prop_IP5PC_F
PALB2_WD40
Anamorsin_N
Vts1
Beta-prop_WDR19_2nd
Beta-prop_pof12
Mating_C
Motif
Other DBs
NCBI-GeneID:
142078045
NCBI-ProteinID:
XP_074996670
LinkDB
All DBs
Position
1:complement(220877874..220894880)
Genome browser
AA seq
1060 aa
AA seq
DB search
MFAEEEWNDGAEGPARAGARPGPRDAPEGPGRPAPAAAAGKRRRRLPGDGEPALKRPGER
RRAARRRAAAEWRPAGSGEPQAEREPQQSEQCPERDVSAELLEERSRPSAEPGALGPGRA
AGEPVQRLSRRQRGNEQKNQRRQKRELRAGPGGQQGAHGQAGAGPGAPELPSLETAPSGR
SAALRARMEERLLAARFRYINQQLYTSTSREAAQLFQNDPEAFEIYHRGFAQQVGRWPEN
PVHRIVRYLRRRPASLVVADFGCGDCKIASSIKNKVHSFDLVPLSPLVTVCDMAKVPLAA
ESVDIAVFCLALMGTNLQEILEEANRVLKQGGTLMVAEVASRFEDIRAFVNAMAQLGFKS
VSKELKGFNSLDDLLHVKGITTRILELNSQRMTCRRRPSSEEAARVSPGLQGDSKGPVPQ
VVAEEEDVSGPWEPERSGKGSPGSGPEADGSSGRGVQEPVSSTVCGEQEEEEEEEEEEGS
CYSEEGEDGSNVYFYYTIGERWIDYLQRTEDGGLLRHVRPKMKRKSENGLDGRALSPGKK
LCKGSEYSRTLGPCMPSPTTTFGDLRNAKAGQARRRRIPSVAPPPELQDWLRTFQRWSGP
EKLLALDELIDRCEPSQIKYMMQVIEPQFQRDFISLLPKELALYVLSFLEPRDLLRAAQT
CRYWRVLAEDNLLWREKCREEGIEEPLNLRKRRLLSPGFMYSPWKFAFMRQHKIDMNWRS
GELKAPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGECVQTLVGHTGGVWSS
QMRDSIVISGSTDRTLKVWNADTGECVHTLYGHTSTVRCMHLHGNRVVSGSRDATLRLWD
IETGQCLHVLMGHVAAVRCVQYDGHKVVSGAYDYTVKVWDPESESCTHTLQGHTNRVYSL
QFDGTHIVSGSLDTSIRVWDVESGNCLHTLMGHQSLTSGMELRDNILVSGNADSTVKIWD
IKTGQCLQTLQGPSKHQSAVTCLQFSSKFVVTSSDDGTVKLWDLKTGEFVRNLVALESGG
SGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVDLK
NT seq
3183 nt
NT seq
+upstream
nt +downstream
nt
atgttcgcggaggaggagtggaacgacggggcggagggccccgcccgggccggggctcgg
ccggggccccgcgacgcccccgagggcccgggccggccggcccccgcggcagcggcgggg
aagcggcgccggcggttgccgggggacggcgagcccgcgctgaagcggcccggggagcgg
aggcgggccgccaggcgccgggcggcggcggagtggcgcccggccggctccggggagccc
caggcggagcgggagccgcagcagagcgagcagtgcccggagagagacgtgtcggctgag
ctgctggaggagcggtcccggccgagcgcggaacccggtgcgctggggccgggacgtgcg
gccggggagccggtgcagaggctgagccggaggcagcgggggaacgagcagaagaatcag
cggcggcagaagagggaactccgggcgggacctggagggcagcagggcgcgcatgggcag
gcaggcgcgggaccgggcgccccggagctgcccagcttggaaacggctccctcgggacgg
tcggcggccctgcgtgcgcggatggaggagcggctcctggccgcccggttccggtacatc
aaccagcagctctacacgtccaccagccgggaagcggcacagctcttccagaacgacccc
gaagcattcgaaatctaccaccgcggctttgctcagcaagtggggcgctggccggagaac
cctgtgcatcgcatcgtccgctacctgcggcggcggccagcctcgctggtggtggcggat
tttgggtgcggtgactgcaagattgcgagcagcatcaagaacaaggttcactccttcgac
ctggtacctctcagcccactggtcaccgtctgcgacatggccaaggtgcctttggcggcc
gagtcagtggacattgcggtgttctgcctggcgctgatgggcaccaacctgcaggagatc
ctggaagaggccaaccgtgtgctgaagcaggggggtaccctgatggtggctgaggtggcc
agccggtttgaggacatccgagccttcgtgaacgccatggctcagctcggcttcaaaagt
gtctccaaggaactgaagggcttcaattcactcgatgatcttctccatgtcaaaggcatc
accacccgcatcttggagctgaacagtcagcggatgacttgcaggaggaggccaagcagt
gaggaagccgcgagggtgagccctggtctgcagggggacagtaaaggtcctgtgcctcag
gtggtggctgaggaggaggatgtttcgggcccctgggagccggagcgctctgggaaaggg
agcccggggtcaggaccagaggctgacggctccagtgggcgaggggtgcaggagccagtc
agctccacagtctgcggggagcaggaggaggaggaggaggaagaagaggaagaggggagc
tgctacagcgaggaaggggaggatggcagcaacgtctacttctattacaccattggagag
cgctggatagactacctgcagcggacagaggatggtgggctcctccgtcacgtgcggccc
aagatgaaacggaagtcagagaatggcctggatggcagggccctttcccctggtaaaaag
ctgtgcaagggctctgagtacagcaggacactgggtccctgcatgcccagtcccaccacc
acctttggggacctgcgcaacgccaaagcaggccaggcacggcgccgccgcatcccctca
gttgcccctcctcccgagctgcaggactggctccgcaccttccagcggtggagtggccca
gagaagctgctcgctctggatgagctcattgatcgctgcgagccctcccaaatcaagtac
atgatgcaggtcattgaaccccagttccaaagagacttcatttccctgctgcccaaggag
ctggcactctatgtcctctcattcctggagcctcgggacttgctccgtgctgcccagacc
tgtcgctactggagggtcttggctgaagataacctgctttggagagagaaatgccgcgaa
gaaggcattgaggaacccttgaacctgcggaagcggcgcctgctgagtcctggattcatg
tacagtccctggaaatttgccttcatgcggcagcacaaaattgacatgaattggcgcagc
ggggagcttaaagcccccaaggtgctgaagggacacgatgaccatgtcattacctgcctg
cagttttgtggcaaccggatagtcagtggctcagatgacaatacgctcaaagtgtggtca
gctgtcactggggagtgtgtgcagacactggttggccacacagggggtgtgtggtcttcc
cagatgagggacagcattgtcatcagcggctccacggaccggacactcaaagtgtggaac
gcagacacaggcgaatgcgtgcacacgctgtatgggcacacatccacagtgcgctgcatg
cacttgcatgggaacagggttgtgagtggctcacgggatgccactctgcgcctctgggac
atcgagactgggcaatgtctgcacgtgctgatggggcacgtggctgccgtgcgctgtgtg
cagtacgatgggcacaaggtggtgagcggtgcatacgactacacagtgaaagtgtgggac
cctgaaagcgagagctgcactcacacgctgcagggacacacgaaccgtgtctactccttg
cagtttgatgggacacacatcgtgagtggctctctggacacgtcgattcgagtgtgggac
gttgagagtggaaactgcctacacaccctcatggggcaccagtcgctcacaagtggcatg
gagttacgtgacaacatccttgtatctggcaatgctgactccacagtcaagatctgggac
atcaagacgggccagtgcctgcaaacactgcaggggcccagcaagcaccagagtgccgtg
acctgcctacagttcagctccaagtttgtggtgaccagctcagatgatggtaccgtcaag
ctctgggacctcaagacgggcgagtttgtgcgcaacctggttgcactggagagtgggggc
agtggcggcgtagtgtggcgcatccgtgcctccaacaccaaacttgtgtgtgcggtgggc
agccgcaatggcacagaggagaccaagctcctggtgctggactttgatgtggacctgaaa
tga
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integrated database retrieval system
