Calonectris borealis (Cory's shearwater): 142078845
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Entry
142078845 CDS
T11211
Symbol
SMCHD1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1 isoform X1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
cbor Calonectris borealis (Cory's shearwater)
Brite
KEGG Orthology (KO) [BR:
cbor00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cbor03036
]
142078845 (SMCHD1)
03400 DNA repair and recombination proteins [BR:
cbor03400
]
142078845 (SMCHD1)
Chromosome and associated proteins [BR:
cbor03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
142078845 (SMCHD1)
DNA repair and recombination proteins [BR:
cbor03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
142078845 (SMCHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMCHD1_S5
Ig_SMCHD1_5th
Ig_SMCHD1_1st
Ig_SMCHD1_6th
Ig_SMCHD1_8th
Ig_SMCHD1_2nd
Ig_SMCHD1_7th
Ig_SMCHD1_4th
SMC_hinge
HATPase_c_3
Big_1
HATPase_c
Motif
Other DBs
NCBI-GeneID:
142078845
NCBI-ProteinID:
XP_074998134
LinkDB
All DBs
Position
2:54964000..55052686
Genome browser
AA seq
2050 aa
AA seq
DB search
MAAAAAAGGSRGARRPVLLTPRGSGDRTVFLFDRRQEQADPDEKVLSYGKDNYRGFRSAV
CQAFGIATDENFVITTTSRKEITEDNFSELVQDGVTLYLLQSVDQMLLSATKERIDFLPH
YDTLVKSGMYEYYASEGQNPLPFALAELIDNSLSATSRISGIRSIQIKLLFDDSQGKPAV
AVIDNGRGMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPLPVPRSLNSDISYFGVGGK
QAVFFVGQSARMISKPADSQDVHELVLSKEDFEKKEKNKEAIYSGYIRNRKPSDSTHITS
DDERFLHNLILEERDKESFTAVVITGVQPDHMQYLKNYFHLWTRQLAHIYHYYIHGPKGN
ETNAVTKDLSPFNNIDIQISMFEKGKVPKIVNLREIKDDMQTLYINTAADSFEFKAHVEG
EGIVEGIIRYHPFLYDKETYPDDPCFPSKLNDDDDDDDDCFIVEKGARGKRPIFECFWNG
RLIPYTTVEDFDWCAPPKKRGLAPVECYNRISGALFTNDKFQVSTNKLTFMDLELKLKDK
NTLFTRIFNGQEQRMKIDREFALWLKDCHEKYDKQIKFTVFKGITTRTDLPSKRMQSPWA
TYAAIEWDGKTYKTGQLVKTIKTLPIFYGSIEKFFLYGDHDGDIFATGGEVQIALEPQAL
YAEMKTIPISKLDRTVSDKAVKKYIEDEMARLPDKLSVTWPEGDELLPNETRFAGTPIGA
LRIVILNKKGEAMQKLPGTSHGGSKKLLVELKVILHSPTGNKEIISHISQHGGKWPYWFK
KMENLQKLGNYTLKLQVVLNESNADTYAGRPLPSKIFKFTIIEGKPEKFSVGLLELPFRV
GVPFNIPLELQDEFGHATQLTTGIKPILEASGLTLQYEEITAGTKCIIKGVTAKGCINSC
QGKNFNLKVTLPGLKEDTQIFKIRLQPGPPRQLKVKPDSEVLKIENGTAFPFQVEVLDES
GNITAQPKLIVHCKFLGASNLPVYSVDCSNAGTNILTGPVIHVQNIKKDQMLKARIEILS
CKDVPPVEKIIKLLPSSHVARLQILSMDGQKAIQIKHQDEINWVAGDVMHNLIFQMYDEG
EREIHITPAVAEKIKVNWTPRINKEQLIQGLLPDVKVPTSVKDVRYCLITYLDDHVSLES
AFTVRPLADEPKHIKCKLKGPNTLQMGEELQSEIDVMITDQYGNQVQTVTSACVNSLGVS
GPGLDKSNLKITWQESTLTMRVKGIRFKSCLLGSKELCFAWREFSDFLRVNVTAGSPAKL
QFVDWPELEKPVAVINGRELQKPLIVQLCDQWGNPSPEPNVKINLTKSNNLRIVPSNQQH
KTDENGRANLGVISIHAPRGEHTLQLKAAYNKTTLDCPIITLNVLPDPEKPVCLNVKYDK
NASFPAGGTFPDFMVSVLSEDDNIIKNINPARICMKMWEAHSSGTRISTEITTFSCSKVK
DDKEDGFFYFRDKMVPERVGTYSIQFTFAMDKTNILSSDQIIVEVVPNDPVRLLPDSLPA
TPAVSNVRTVTSRTLVKDLYLHVMDEYNNHTGIDLVGRIIAKIMSPNEDDIEIPQFQGKV
STIEFPFDRGSAEINLVLAENSPGRDSTEYILVFEPDLPALKKPLEPYRLSFMFYNDFKK
QQQMATLTRERDQLSQSIGVYRKWFDTTNQLVTELKYQVKEAETRETQLKNELKKHQIEL
PQTNTLQYVDSFIKQKMLDQEGVMKQPRRTCTLPNYPKGNQEILGKIAHLAQIEDNEAAK
VISWHLASDMDCVVTLTTEAARSIFDETQGRQQVLPLDSIYKKTLPDWNRPLPHLRNGKI
FFRPIGNPVFARDLLTFPDNVEHCQTVFGMLLGDTIIIDNLDAANHYRKEVVKITDCPTL
LTREGDRIRSNGKFGGLQNKAPPMDKLRGMVFGAPIPKLYFTFSGQIDLLQQYRAAVVKL
DNVNKDLDSHLQSLNTPEVQKKKQELAEQEKSLKIIEQKLGMTPSDKVTESLLQPIMLDM
SDTPIPPKRMRRETVKKLYSSEEWISSPTKKQQQQQQQQQQQQHQQQHLQQQPLQMSPSE
LNGTARKRKA
NT seq
6153 nt
NT seq
+upstream
nt +downstream
nt
atggcagcggcggcggccgcgggaggcagccgcggagctcgcaggccggtgctactgacg
cctcgcggcagcggggaccgcaccgtgtttctcttcgaccggcgccaggagcaggcagat
ccggacgagaaagtgctcagctacggcaaggacaactaccgcggcttccgcagcgccgtc
tgccaggcatttggcatagctactgatgaaaactttgttatcaccacaacaagcaggaag
gaaattacagaagacaacttcagcgaacttgttcaagatggagttactttatatctgcta
cagtcagttgatcaaatgctgctttcagcaaccaaggaacgaattgacttcctgccccac
tacgatacacttgtcaaaagtggaatgtacgagtactatgccagcgaaggacaaaatcct
ttgccatttgcccttgcggagttgattgacaactctctatcagctacatcccgaattagt
ggtattcggagcatacagataaaattgttatttgatgactcccaaggaaaaccagctgtt
gctgtgattgataatggaagaggaatgacttctaaacagcttaacaactgggctgtatat
agactgtcaaagtttacaagacaaggtgacttcgagagtgatcattcaggatatgtacgc
cctttgccagtgcctcgtagtttaaatagtgatatctcatattttggagttggaggcaaa
caagcggtgttcttcgttggacagtctgccagaatgataagcaaacctgcagattctcag
gatgttcatgaacttgtcctttccaaagaggattttgaaaagaaggagaaaaacaaagaa
gcaatatatagtggatacattcgaaacaggaagccctctgactctactcacatcacaagt
gatgatgaaagatttcttcataatctaatattagaagaaagggataaagagagtttcaca
gcagttgtcattacaggtgtacaaccagatcacatgcagtacttgaaaaactactttcat
ctttggacaaggcagctggcacatatctatcactattatatccatggaccaaaaggaaat
gaaactaatgctgtaacaaaagacttaagccctttcaacaacatcgacattcagatttca
atgttcgaaaaaggaaaagtaccaaagattgtcaatcttagggagatcaaagatgacatg
cagacattgtatataaatactgcagcagatagttttgagtttaaggcacatgttgaagga
gaaggtatagtggaaggcatcatccgatatcatcccttcctgtatgataaagaaacatac
cctgatgatccgtgttttccatcaaaattaaacgatgatgatgatgatgatgatgactgc
tttatagtagaaaagggtgccagaggaaaaaggcctatttttgaatgtttttggaatgga
agattaataccatacacaactgtagaagattttgactggtgcgctcctccaaagaagaga
ggattggcaccagtggaatgctacaacagaatttctggtgcattgtttaccaatgataag
ttccaggtcagcacaaacaaactcactttcatggatctggagctgaagctaaaagataag
aacactctgttcacgagaatcttcaatggacaggagcagcgtatgaaaattgacagagaa
tttgctttgtggcttaaagactgtcatgaaaaatatgacaaacagataaaattcacagtc
tttaaaggaataactacacgtactgatttaccttccaaaagaatgcagagcccttgggca
acgtatgctgcaatagagtgggatgggaaaacatacaaaactggacagctggtgaaaact
attaagactcttccaatattctatggaagtattgagaaattttttttgtatggagaccat
gatggggatatatttgccactggaggagaggttcaaattgctttggaacctcaggcattg
tatgctgaaatgaagactattccaatctcaaaacttgacagaacagtgtctgacaaagct
gttaaaaaatacatagaggatgaaatggcaagacttcctgacaaattatcagtaacatgg
cctgaaggagatgaattattaccaaatgaaacaagatttgctggtacaccaataggagca
ttaagaatagtaattttgaataaaaaaggagaagcaatgcaaaaacttccaggtacaagc
cacggaggttcaaagaaacttcttgttgaactcaaggttattttacattcacctactggg
aataaagaaataatttcccatatcagtcagcatggaggcaaatggccatactggtttaaa
aaaatggaaaatcttcagaaacttgggaactacaccttgaaactgcaagtagtattgaat
gaaagtaatgcagacacttatgcaggaaggcctctaccatctaaaatatttaaatttact
attatagagggtaaaccagagaaattttcagtgggtcttttggagcttccttttcgagtt
ggagtaccttttaatattcctttggaattgcaggatgaatttggtcatgcaacacagttg
acaactggcattaaaccaattcttgaagctagtggattgacactgcagtatgaagaaata
actgcaggaacaaagtgcatcatcaagggtgtcactgctaaaggctgtataaatagttgc
cagggcaagaactttaatctgaaggttactcttcctggtttgaaagaagacacacaaatc
ttcaaaataagattgcagcctggccctcctcgtcaattgaaagtaaaaccagattctgaa
gttctaaagattgaaaatggtacagctttcccctttcaggttgaagtactggatgaatca
ggaaatataacagcacagccgaagttgatagttcattgtaagtttttaggtgcttcaaac
cttcctgtgtattctgtggactgcagtaatgcaggaacaaacattttaactggtccagtt
atacatgtacagaatatcaagaaagaccagatgctgaaagcaaggattgaaatacttagt
tgtaaagatgtgccgccagtggagaagattattaaacttcttcctagcagtcatgttgca
agactacagatcttaagtatggatggacaaaaagctattcaaattaaacatcaggatgaa
attaattgggttgctggcgatgtcatgcataaccttatatttcagatgtatgatgaagga
gaaagggaaatacacataactccagctgtggcagaaaaaatcaaggttaactggacacct
agaattaacaaagaacagttgattcagggattattacctgatgtaaaagtaccaacatca
gtaaaagatgtacgttactgtctaatcacttatcttgatgaccatgtgtctttggagagt
gcgttcacagtcagaccgcttgctgatgaacccaaacacattaaatgtaaattaaaagga
ccaaacacactgcagatgggtgaagaactacaaagtgaaattgatgtaatgattacagat
cagtacggaaatcaagttcagacagtgacgtctgcatgtgtaaattccctaggagtttct
gggcctggacttgataaatcaaatttgaaaataacttggcaggaaagtactctaacaatg
agagtaaaaggtattcggtttaaatcttgtttacttggaagcaaagaattgtgcttcgct
tggcgtgaattttctgactttctcagagtaaatgtaactgcaggatcccctgctaaattg
cagtttgtggattggccagagttagaaaagcctgttgcagtgattaatggtagagaattg
cagaagccgcttattgttcagctatgtgatcagtggggaaatccatctcctgaacctaat
gtcaaaatcaaccttacaaagagtaacaacttaaggattgttccttcaaaccagcaacat
aaaacagatgaaaatggtagggctaacctgggagttattagtattcatgcacctagggga
gagcacactttacagcttaaagccgcatacaacaagaccacattagattgtcctataatc
acattaaatgtcctgcctgatcctgagaaacctgtctgcttgaatgttaaatatgacaaa
aatgcttcttttccagcaggaggtacctttcctgattttatggttagtgttctttctgaa
gatgacaacattattaaaaatattaatccagcacggatttgtatgaaaatgtgggaagcg
catagcagcggaactaggatatcaactgaaattacaacatttagctgtagtaaagtgaag
gatgataaggaagatggcttcttttacttcagggataaaatggttccagagagagtgggc
acttacagtatccagtttacctttgcaatggataagacaaatatactcagcagtgaccag
attatagttgaagttgtacctaatgaccctgtacgcttgttacctgattctttaccagct
actccagcagtttccaatgttcgaactgttactagccgtacactggtcaaggatttatac
ctccatgtaatggatgaatacaacaaccacactggaattgatctagttggcagaataata
gcaaaaattatgagccccaatgaagatgatatagagatcccgcagtttcaggggaaagtc
agtacaattgagtttccatttgacagaggatcagctgaaattaatctagtgctggctgaa
aacagtcctggaagagatagcactgaatatattcttgtatttgagccagatctgccagct
ttgaaaaaacctttggaaccataccgtctgtcatttatgttttacaatgatttcaagaag
cagcaacagatggcaacacttacaagggagagagaccaattatctcagtccataggtgtt
tacagaaaatggtttgatactactaatcagcttgtaactgaattgaaatatcaggttaaa
gaagctgaaacaagagaaactcaactgaagaatgaactgaagaaacaccaaattgaatta
ccacagacaaacacacttcagtatgtggattcttttataaaacaaaagatgttggatcaa
gaaggagtaatgaaacagccaagacgaacttgtacgctcccaaactatccaaaaggcaac
caggagattttaggcaagattgcacatttagcacaaattgaggataacgaagcagcaaaa
gttatctcttggcatttggccagcgacatggactgtgtagtcacactgactactgaagcc
gctcgttctatttttgatgaaactcaaggtcgacagcaagtgttaccccttgattctatt
tacaagaagacactccctgattggaacaggcctttacctcacttaagaaatggaaaaatc
ttcttcagacctattggaaatccagtatttgccagagatctgttaacatttccagataat
gtagagcattgtcaaacagtgtttgggatgctcttgggtgacactatcattatagataac
ttggatgctgccaatcattacagaaaagaggttgtaaaaattacagattgccctactttg
ctgactagggaaggagacaggattcgcagcaatggaaaatttggaggccttcagaataaa
gctcctccaatggacaaactcagaggaatggtatttggagcacccataccaaaactttac
tttactttctctggacagatagatcttcttcagcaataccgtgcagcagtggtgaaactt
gataatgtgaataaggaccttgattcacatttgcagtcacttaacactccagaagtgcaa
aagaaaaaacaggaacttgccgaacaagagaaaagtctcaagataatagaacaaaaattg
ggtatgactccatcagataaagtcactgaatcattacttcagcctataatgttagatatg
tctgacacccccatccctcccaaaagaatgcgaagagaaacagtaaaaaaattgtatagc
tcagaagaatggatctcctctcccacaaagaagcagcagcagcagcaacagcagcagcag
caacagcagcatcagcaacagcacctgcagcagcaaccactgcaaatgtccccttcagaa
cttaatggaactgcacgaaagagaaaggcatag
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integrated database retrieval system
