Calonectris borealis (Cory's shearwater): 142082877
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Entry
142082877 CDS
T11211
Symbol
ABCD4
Name
(RefSeq) lysosomal cobalamin transporter ABCD4 isoform X1
KO
K05678
ATP-binding cassette, subfamily D (ALD), member 4 [EC:
7.6.2.8
]
Organism
cbor Calonectris borealis (Cory's shearwater)
Pathway
cbor02010
ABC transporters
cbor04146
Peroxisome
cbor04977
Vitamin digestion and absorption
cbor04980
Cobalamin transport and metabolism
Brite
KEGG Orthology (KO) [BR:
cbor00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
142082877 (ABCD4)
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
142082877 (ABCD4)
09150 Organismal Systems
09154 Digestive system
04977 Vitamin digestion and absorption
142082877 (ABCD4)
04980 Cobalamin transport and metabolism
142082877 (ABCD4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cbor04131
]
142082877 (ABCD4)
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
cbor02000
]
142082877 (ABCD4)
Enzymes [BR:
cbor01000
]
7. Translocases
7.6 Catalysing the translocation of other compounds
7.6.2 Linked to the hydrolysis of a nucleoside triphosphate
7.6.2.8 ABC-type vitamin B12 transporter
142082877 (ABCD4)
Membrane trafficking [BR:
cbor04131
]
Endosome - Lysosome transport
Others
Lysosomal membrane proteins
142082877 (ABCD4)
Transporters [BR:
cbor02000
]
ABC transporters, eukaryotic type
ABCD (ALD) subfamily
ABCD4 subgroup
142082877 (ABCD4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane_2
ABC_tran
AAA_16
AAA_7
SbmA_BacA
AAA_30
AAA_22
nSTAND1
DUF6079_1st
nSTAND3
AAA_23
Motif
Other DBs
NCBI-GeneID:
142082877
NCBI-ProteinID:
XP_075007664
LinkDB
All DBs
Position
5:27002182..27018007
Genome browser
AA seq
627 aa
AA seq
DB search
MAGGSAGAGGAGAGGRPAPRLDGLFLRRFLRLQAVLFPGWLSPGALMFLTLLCVALLEQL
VIYQVGVIPSQYYEVLGNKDFSGFKTLTAVALTLIVVNSTLKSFDQFICNMMYVSWRKSL
TEYLHSCYFQGQVYYSLHVMREDIDNPDQRISQDVERFCRQLSSMASKLIISPFTLAYYT
YQCFHSTGWLGPVSIFGYFIIGTIVNKVLMSPIVSKLVQQEKLEGDFRFKHMQIRVNAEP
AAFYRAGQVEHMRTDRRLQSLLRTQRELIGKELWLYIGINTFDYLGSILSYVIIAIPIFS
GVYGDLSPTELSALVSKNAFVSIYLIGCFSQLIDLSSTLTDVAGYTHRIGELQETLLSLG
RKKNGNYSETKASWDLDGSHSGEDPVPKETAFLLERVTLSVPSSGKLLIKDLSLRISQGN
SVMIVGNTGTGKTSLLRVLGGLWESTRGSIKMLTCFGPRGVVFLPQRPFFTDGSLREQVI
YPLKEIYPVSGSADDERIVRFLELAGLTDLLARAGGLDEQVDWNWYDILSPGEMQRLSFA
RLFYLQPKYAGPMAPEEAASQHAHQLLHKEAFMLGSVVSAAISEARKPLRLWKQCGKFSC
YAAKEDKEQWEKRSCEIKQAAPISRWG
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atggcgggaggcagcgccggggcggggggcgccggggccggcggccggcctgccccccgg
ctggacgggctgttcctgcggcgcttcctgcggctgcaggctgtcctcttccccgggtgg
ctctccccgggcgccctgatgttcctgacgctgctctgcgtcgccctgctggagcagctg
gttatttaccaggtcggcgtcatccccagccagtactacgaggtcctagggaacaaggac
ttctccgggttcaagacactgactgccgttgccctgactctgatcgtagtgaactccacg
ctaaaaagctttgaccagtttatctgtaacatgatgtatgtgagctggaggaaatccctc
accgaatacctccacagctgctacttccagggccaggtctactacagcctgcacgtgatg
cgcgaggacatcgataacccggaccagcgcatcagccaggatgtggagaggttctgcagg
cagctcagctccatggccagcaagctcatcatctcgcccttcacgctggcctactacacg
taccagtgcttccacagtacaggctggctaggcccagtgagcatctttgggtatttcatc
attgggacgatcgtcaacaaggtattgatgagcccaattgtgtctaaacttgtgcagcag
gaaaaactggagggtgatttcaggttcaagcacatgcagattcgtgtcaatgcggaacca
gctgctttctacagggccgggcaagtggagcacatgcgcacggaccggaggctgcagagc
ctgctgcggacccagagggagctgataggcaaggagctgtggctatacattgggatcaac
acctttgactacctgggcagcatcctgagctacgtgatcattgccattcccatcttttct
ggggtctacggtgacctgagtccgacagagctcagcgccctcgtcagcaagaatgccttt
gtttccatctacctcatcggctgcttcagccagctcatagatctctccagcactttgaca
gatgtagctggctacacgcacaggattggtgaactgcaggagaccttgctgagccttggc
agaaaaaaaaatggtaactactcagaaaccaaagccagctgggatttggacgggagccat
tctggggaggacccagtgccaaaggagacagctttccttctggagcgagtgacgctctct
gtaccatcctctggcaagctgctcatcaaggacttgagcctcaggatctcacaaggaaac
agtgtgatgattgtggggaacactggcacagggaagacatctctcctgagggtccttggt
ggactctgggagagcacgcgggggagcatcaagatgctgacctgctttggcccccgtgga
gtggtgttcctgccgcagcggcccttcttcactgacggaagcctgcgcgagcaggtaatc
tatcctctgaaggagatctatccagtttcagggtctgcagatgatgagagaattgtgcga
ttcctagagttggctgggctgactgatttgctggcgagggctggaggactggacgagcag
gtggactggaactggtatgacatcctgtccccaggggagatgcagaggctttcgtttgca
cggctcttctacctccagccaaaatatgcgggtccgatggcacctgaagaagccgcctct
cagcatgctcaccagttgctacataaagaagcgttcatgttagggagcgtggtgtcagct
gccatatctgaagctcgtaaacctctacggttgtggaagcaatgtgggaaatttagctgt
tacgcagcaaaagaggacaaggagcagtgggaaaaacggtcctgcgagatcaaacaagcc
gctcccattagcagatggggctaa
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