Calonectris borealis (Cory's shearwater): 142084035
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Entry
142084035 CDS
T11211
Symbol
PCDH15
Name
(RefSeq) protocadherin-15 isoform X1
KO
K16500
protocadherin-15
Organism
cbor Calonectris borealis (Cory's shearwater)
Pathway
cbor04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
cbor00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
142084035 (PCDH15)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
cbor03037
]
142084035 (PCDH15)
04515 Cell adhesion molecules [BR:
cbor04515
]
142084035 (PCDH15)
Cilium and associated proteins [BR:
cbor03037
]
Primary cilia and associated proteins
USH complex and associated proteins
142084035 (PCDH15)
Cell adhesion molecules [BR:
cbor04515
]
Cadherins
Protocadherins
142084035 (PCDH15)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
ECD
PCDH15_12th
Ig_Cad99C_N
Cadherin_CELSR2_9th
Cadherin_FAT4_N
Ig_CLSTN
RET_CLD1
Fibulin_C
CDH23_a-b
Ig_BT4661_3rd
Rv2386A
SelP_N
Motif
Other DBs
NCBI-GeneID:
142084035
NCBI-ProteinID:
XP_075010175
LinkDB
All DBs
Position
7:complement(3985261..4813041)
Genome browser
AA seq
1711 aa
AA seq
DB search
MLQRFCLWKWLAVGIAVATILAGCLAQNDEDCKLARTGPPATIVPIDEESRNGTILVDNM
LIKGTAGGPDPTIELSLKDNVDYWVILDPISQRLYLNSTGRILDRDPPMSIQSIVVQVQC
VNKKVGTIINHEVRIVVRDRNDNSPRFQQQRYHVAVNELTPVGTTIFTGFSGNNGATDID
DGPNGQIEYVIQYNPNDKTSNRTFDIPLTLSGAVVLRERLNYEEKMRYFVIVQANDRAQN
LNERRTSTTTLTVDVLDGDDLGPMFLPCVLVNNTRDCRPLTYQASLPELTDPARVNPISV
TPPIQAIDQDRNIQPPSDRPGILYSILVGTPEDYPQYFHMNLTTAVLTLLKPINRDLHQK
FDLVVKAEQDNGHPLPAFANLHIEVLDENNQKPYFTRSTYEGFILESSPVGTTISDNQNL
TSPLQIVVLDNDVEETKDPQLHLFLNDYNTFFTVTQSGITRYLTLLQPVDREVQQLYTFS
MTASDGVQESVPVTVNILVIDANDNSPSFSNISYNVKIYTDMRPGEGVIKLTAVDADEGP
NGQIVYEILAGDQGDFIINDRTGLITIAPGVVLSVGRSYALTVKASDSAPPAQRRSSITT
VYIEVLPPNNQSPPRFPQLMYSLEVSEAMRIGAVLLNLQAFDREGDLIRYLIQNGDPQQV
FNLSQSSGLLALGKPLDRESTDRYILIVTASDGRPDGTSTATVNIVVTDVNDNGPVFDMF
LPKNLSVQEEEANAFVGQVRATDPDAGVNGQVHYSLANFNNLFRITSNGSIYTAVKLNRE
VRDYYELTVEATDGAVDPRRSTLTLAIKVLDIDDNSPVFTNASYTVCVPENLPPGTVFLQ
IEAKDVDLGSDVNYRIRTQEALQYFALNQYTGELSLLKSLDYESFSDTEATFTFLVEAFD
SKGTMPPGLATVTVRVKDMNDYSPVFSKNLYRGMVAPDAVKGTVITTVSAEDQDPPGTPA
SRVRYKVDVVQFPYSASIFDVDENSGRVVTRVNLNEAPSTVFKLVVIAYDDGDPVKFNTT
TVEIAVLQPSVIPRFTQDEYRPPPVSESAPKGTVVTVVTAAALNQTIVYSIVSGNEEDVF
AINNRTGVISVKKSLDYESVKSYELRVQADSLQVVRSNLRVPSKSNTAKVFIEVKDENDH
VPVFTKKMYIGGVSEDAKMFSSVLKVKADDKDTGNYSAMQYRLIIPPIKDGKEGFVIEAY
TGLIKTAMLFKNMRRSYFKFQVIATDNYGKGLSSKAEVLVSVVNQLDMQVIVSNVPPTLV
EQNKDQLIGILERYVQDQIPGATVVVESIGARRFGDGYSEEDYTKSDLMVYAIDPQTNRA
IMRNELFKFLDGKLLDINKEFQPYLGQGGRILEIRTPDVVANVKKQAQAVGYTEGALLAL
AVIIILCCMPAILIVMVSYRQRQAECAKTARIQMALPAGKPASTAANNLYEELGDSTMRG
YAQQEQQQLLRPSLLRPEELSMESGIDPGQEYYGQDYYSYEHGYELPQYGSRRRLLSPSG
MYDEYGEVVVENDGGYYYSPHGSTAEEWARKKRIKLIVDPEYETSSTGEDSAPDSSQRNR
LNNPNIQNNINGNIYIAQNGSVVRTRRVCLGNNLKVTSPVRLGKQFKKLDKLAVTHEENV
PLNTLSKGHSSSDKMNTRPCSVSFASSTIGAENIVTKPGGSKMKSTEEQESVVDNEDVKE
PLESHSEHTQSDEEELWMGPWNNLHIPMTKL
NT seq
5136 nt
NT seq
+upstream
nt +downstream
nt
atgttacagcggttttgtctctggaaatggttagctgtagggattgcagttgctactatc
ttagcaggttgtttggcccagaatgacgaagattgcaaattggccagaacaggtcctcca
gccacaatagttcctattgatgaagaaagtcggaacggcactatcctggttgacaatatg
ctgatcaaagggaccgcaggagggccggaccccaccattgaactctccttaaaggacaac
gtagattactgggtgatcctcgatcctatcagccagaggttatacctaaatagcactggc
cgaattctggacagagatccgccgatgtccattcagtccattgtggtgcaagtccagtgt
gttaacaaaaaggtcggcaccatcatcaaccacgaagtacggattgtggtgagagacagg
aacgataactcgcctcggttccagcagcagcgataccacgtggcagtcaatgagttaact
ccagttggaacaaccatctttacaggattttctggaaacaatggtgctactgacattgat
gatggtccaaacggccagatagaatatgtcatccagtacaatcctaatgacaagacttcc
aacaggacctttgatattcctctcactttgtccggagcagtagttctaagggaaagacta
aattatgaagaaaagatgcgttattttgtcattgttcaagcaaatgaccgagcccaaaat
cttaacgagcgaaggacaagtacaaccaccctgacagtagatgtgctcgatggggacgat
ttgggaccaatgtttcttccttgtgtcttagtgaataatactcgtgactgtagacctctc
acctaccaagcgagcttgccagaactgactgatcctgcacgtgtgaatcccatcagtgtc
actccacccatacaagccatagatcaggaccgaaacatccagcctccttccgatcgaccg
ggcatcctctattccatcctagttggtactcctgaggattatccacagtatttccatatg
aatctcacaacagctgtactcacgctcctaaagccaataaatagggatttacaccagaag
tttgacttggttgttaaggctgaacaagacaacggccatcctcttcctgcctttgccaac
ctgcatattgaagtcctggatgagaacaatcagaagccttatttcacaagatctacgtat
gagggcttcatcctcgaatcctcccccgtgggaacgaccatctctgataaccagaatctg
acttctccgctacaaatcgtcgtgttggacaacgatgtggaggagaccaaggatccccag
ctccatctctttctgaacgattacaatacgtttttcactgtgactcagagtggcatcacc
cgctacctcaccctgctgcagcctgttgacagagaagtccagcagctttacaccttctcg
atgacagcttctgatggtgtacaggagagtgtcccagtgacagtcaatatcctggtgatt
gatgcaaatgataattccccaagcttctccaatatatcatacaacgtcaagatttataca
gatatgaggcctggggaaggcgttataaagctcactgctgtagatgcggacgagggaccc
aatggacagatagtatatgaaattttggctggggatcagggagacttcatcatcaatgac
cgaacaggccttatcaccattgctccaggagttgtattgtcagtggggcgatcctatgct
ctcactgtcaaagcatctgatagcgctcctcctgcacagagaaggagctctattactact
gtttacattgaggtccttccgcccaacaaccagagccctccccgctttccccagctgatg
tacagccttgaagtcagcgaggccatgagaattggagccgttttgttaaacctgcaggct
tttgatagagagggtgaccttataagatacctcattcagaatggagatcctcaacaagtt
tttaatctctctcaaagttctggactgctagccttaggaaagcccttggacagagaaagc
actgatcgctatattctgattgttacagcctcggatggcagaccagatgggacttcaact
gctactgttaatatagtggtgacggatgtaaatgacaacggaccagtttttgatatgttt
ctacctaaaaacctgtctgtgcaggaggaggaagccaatgcttttgttggtcaagtaagg
gctacagacccagatgctggtgttaatggtcaagttcattacagtttggcaaacttcaac
aatcttttccgaatcacatccaatggtagcatttatacagcagttaaactgaacagagaa
gtgagggactattacgaacttactgttgaagcaacagacggagctgtggaccctcgccgt
tcaacgctaactttagcgatcaaggtgctggatattgatgacaacagccctgtttttact
aatgcttcctacactgtctgcgtgccggaaaatctaccaccaggcactgtcttcctgcaa
atagaggcgaaggatgttgatcttggttctgatgttaactatcgaatacggacacaggag
gcactacagtattttgcactgaaccagtatacaggcgagttatcgcttttgaagtccttg
gattatgaatcattctctgacacagaagcaaccttcacctttctcgtggaagccttcgat
agcaagggcactatgcctcctggtctcgcgactgtcacagtgagagtgaaggatatgaat
gattactctccagtatttagcaaaaacctctacaggggaatggttgctcctgatgcagtc
aagggcaccgttatcactaccgtttcagctgaggatcaagatcctccgggcacaccagca
agtcgagtccgatacaaagtagatgttgtccagtttccttacagtgccagcatttttgac
gtggatgaaaactcaggacgtgtagtaacccgagtaaacctaaatgaagcgccaagtaca
gtgtttaagctagtggtcattgcatatgatgatggggatcccgtgaagttcaataccact
accgtagaaattgctgtactgcagccttcagtaattccacggtttacgcaggatgaatac
agacccccgccggtgagtgaaagtgcaccaaaaggaactgtggtcacagttgtaacagcg
gccgccttgaaccagacaattgtatattcaattgtttcgggaaatgaagaggatgtgttt
gctattaataacagaacaggcgtgatctcggttaaaaagtctctggattatgaaagtgtg
aaaagctacgagcttcgagttcaagcagactccttacaagtggtacgatccaatctgcgt
gtcccttccaaaagtaatacagccaaggtatttattgaagtgaaggatgaaaatgaccat
gtgcctgtcttcaccaaaaaaatgtacattgggggagtgtctgaagatgccaaaatgttt
tcttctgtgcttaaagttaaggctgatgataaagacactgggaattacagtgccatgcaa
tacagactcatcattcctccaatcaaggatggtaaagaaggttttgtgattgaagcttac
acggggctaataaaaactgctatgctgttcaaaaatatgagaagatcctatttcaagttt
caggtcattgcaactgacaattatggaaaaggactgagcagcaaagcagaagtacttgtc
tctgtggtcaatcagttggatatgcaagtcatcgtctctaatgttcctcccacccttgtg
gaacagaacaaagatcaactcatagggattttggaacgctatgtccaagatcagattccc
ggtgcgacggtcgtggtggaatccatcggtgcgcggaggtttggggatgggtactctgaa
gaggattacaccaagtctgacctcatggtctacgcaatcgacccgcaaacaaatagagct
ataatgaggaacgaactttttaagttcctggatggcaaactgctggatatcaataaagag
tttcagccgtacctggggcagggtggacgcatcctggagatccgcaccccggacgtggta
gcgaatgtcaagaagcaggcgcaagccgtaggctacacggaaggcgcgttacttgctctg
gccgtcataatcatcctttgctgtatgccagctattttaatagttatggtcagctacaga
cagcgacaggctgaatgtgcaaagactgcgagaatccagatggctttaccagcaggcaaa
ccagcaagcaccgctgccaataacctctacgaagagcttggcgacagcaccatgcgagga
tatgcacagcaagagcaacagcagttgctgagaccttctcttctcagaccagaggagtta
agtatggagtctggaattgatccagggcaggaatactatgggcaagattactacagttat
gagcatgggtacgaattgcctcagtatgggagccgccgccgattgctgtctccttcaggg
atgtacgatgagtacggggaagtcgtggtggagaacgacggtggctactactatagcccg
catggatcgacagcagaagagtgggccagaaagaaaaggatcaagttgatagtcgaccca
gagtatgagaccagctccaccggagaagacagcgcccccgattccagccagaggaatcgt
cttaataacccgaatattcaaaacaacatcaacggtaacatctacattgcacagaacggc
tctgttgtcagaacccgtcgcgtttgccttggtaataatttaaaagtcacatctccagtg
aggctggggaaacaattcaagaaactggacaagcttgcagtgacacacgaggagaacgtc
ccactgaacacattgtcaaagggacactcttctagtgataaaatgaacacaagaccttgc
agtgtctcatttgcttcctctacgataggggccgaaaatatagtaacaaagccagggggc
tccaaaatgaaaagcacagaagagcaggagtcagttgttgataatgaggatgtcaaagag
cccttggagtcgcacagcgaacacacacagtcagatgaagaggagctctggatgggccct
tggaacaaccttcacataccaatgacaaaactgtga
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integrated database retrieval system
