Calonectris borealis (Cory's shearwater): 142090829
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Entry
142090829 CDS
T11211
Symbol
RFNG
Name
(RefSeq) beta-1,3-N-acetylglucosaminyltransferase radical fringe
KO
K05948
fringe [EC:
2.4.1.222
]
Organism
cbor Calonectris borealis (Cory's shearwater)
Pathway
cbor00514
Other types of O-glycan biosynthesis
cbor04330
Notch signaling pathway
Brite
KEGG Orthology (KO) [BR:
cbor00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00514 Other types of O-glycan biosynthesis
142090829 (RFNG)
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
142090829 (RFNG)
09180 Brite Hierarchies
09181 Protein families: metabolism
01003 Glycosyltransferases [BR:
cbor01003
]
142090829 (RFNG)
Enzymes [BR:
cbor01000
]
2. Transferases
2.4 Glycosyltransferases
2.4.1 Hexosyltransferases
2.4.1.222 O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
142090829 (RFNG)
Glycosyltransferases [BR:
cbor01003
]
Glycan extension
O-Glycan
142090829 (RFNG)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fringe
Galactosyl_T
Motif
Other DBs
NCBI-GeneID:
142090829
NCBI-ProteinID:
XP_075025312
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Position
20:303253..311480
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AA seq
380 aa
AA seq
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MSGSCLGLRKACFLLSVSAAALLLLLLPRGQPPAAPRRRPPPAAAGPSAPPPQRAGPGGS
GVAGSRGEPGGGPGAETGAGGRGGGLAGSPQPARKGRLGPARGSGRESLELKDIFIAVKT
TRKYHRSRLDLLLQTWISQARGQTFIFTDWEDRELRLKAGDHMINTNCSAVHTRQALCCK
MSVEYDKFLESGQKWFCHVDDDNYVNPRTLLRLLSAFSHSQDVYVGRPSLDHPIEAADHV
QSDGSKTTVKFWFATGGAGFCISRGLALKMSPWASLGNFISTAERVRLPDDCTIGYIIEG
LLEVKLLHSPLFHSHLENLQRLQGESVLQQVTLSYGDPENKHNVVSVGGVFGLQQDPTRF
KSVHCLLYPDTIWCPAKKIS
NT seq
1143 nt
NT seq
+upstream
nt +downstream
nt
atgagcggctcctgcctggggctccgcaaggcctgcttcctgctgtccgtcagcgccgcc
gccctcctgctcctgctgctgccgcgggggcagccccccgccgcgccccgccgccgcccg
ccgcccgctgccgccgggcctagcgcgcccccgccgcagcgggcgggccccggggggagc
ggcgtggcgggctcgcgcggggagccgggcggcgggccgggggccgagaccggggcgggc
ggccggggcgggggcctcgctggcagcccgcagcccgcgcggaagggccgcctcgggccg
gccaggggctcgggcagggagagcctggagctgaaagacatcttcattgcggtgaagacc
accaggaagtaccacaggagccggctggacttgctcctgcaaacctggatctcccaggcg
aggggacagacatttatattcacagactgggaggatcgggagctacgcctgaaagcaggg
gatcatatgatcaacaccaactgttctgctgtccatacccggcaagctctctgctgcaag
atgtctgtggaatatgataaattcttggaatctgggcaaaaatggttttgccatgtggac
gatgacaactatgtgaaccctcggactctcctgcgtctcttatctgccttctcacacagc
caggatgtctatgtggggcgaccgagtctggaccatcccatcgaagcagctgaccatgtc
caaagtgatggatcaaagacaaccgtgaaattctggtttgccacaggtggagcagggttc
tgtatcagcagaggtcttgccctgaagatgagtccctgggccagcctaggtaatttcatc
agtactgcagaaagggtgcgtcttcctgacgactgcactattggctacatcattgaaggg
ctgctggaggtaaagctgctgcacagcccgttgttccattcccatctggaaaatctgcag
agactacaaggcgagtctgtgctgcagcaggtaaccctaagttatggggaccctgagaac
aaacacaatgttgtgagtgtggggggagtgtttggccttcagcaagatccaacccgattt
aaatctgtccattgcctgctctatcctgacactatttggtgccctgctaagaagatctct
taa
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