Calonectris borealis (Cory's shearwater): 142091812
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Entry
142091812 CDS
T11211
Symbol
EFTUD2
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
cbor Calonectris borealis (Cory's shearwater)
Pathway
cbor03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cbor00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
142091812 (EFTUD2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cbor03041
]
142091812 (EFTUD2)
Spliceosome [BR:
cbor03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
142091812 (EFTUD2)
Complex C
U5 SnRNP specific factors
142091812 (EFTUD2)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
Septin
FANCL_d3
Motif
Other DBs
NCBI-GeneID:
142091812
NCBI-ProteinID:
XP_075027276
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All DBs
Position
22:complement(5072785..5094971)
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AA seq
972 aa
AA seq
DB search
MDTDLYDEFGNYIGPELDSDDDDDELGRESKDLDELEDDDDDDDMGDHDEDHPGMEVVLH
EDKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKKFSLMEQTLPVTVYEMDFLA
DLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVG
IKSTPVTIVLPDTKGKSFLFNIIDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTE
RLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLVL
SPLLGNVCFSSSQYSICFTLGSFAKIYADTYGDINYQEFAKRLWGDIYFNPKTRKFTKKA
PTSSSQRSFVEFILEPLYKILAQVVGDVDTTLPRTLDELGIHLTKEELKLNIRPLLRLVC
KKFFGEFTGFVDMCVQHIPSPKVGAKTKIEHTYTGGVDSDLGEAMSECDPDGPLMCHTTK
MYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQICTVGRLWISVARYHIE
VNRVPAGNWVLIEGVDQPIVKTATVTEPRGNEEAQIFRPLKFNTTSVIKIAVEPVNPSEL
PKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVV
TFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQT
KYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKSLLGSVKDSIVQGFQWGTREGPLC
DELIRNVKFKILDAVIAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPA
DCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSV
FHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLE
LAKQDVVLNYPM
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atggacaccgacctgtacgacgagtttgggaactacatcgggccggagctggactcggac
gatgacgacgacgagttgggcagagagtccaaggatctggacgagctcgaggatgatgat
gatgacgacgatatgggggaccatgatgaggaccaccctgggatggaggtggtgctgcat
gaggataagaagtactatcccaccgccgaggaggtctatgggcctgaagtagagacgata
gtacaagaggaagacacgcagcctctcactgagcctattattaaacctgtgaaaacaaaa
aaattctctctgatggaacagacgttaccggtcaccgtctatgagatggatttcctggca
gatctgatggacaactcggagctaattagaaatgtgactctgtgtgggcaccttcaccac
ggcaagacgtgttttgttgactgcctgatagaacagacacacccagaaatccggaagcgc
tatgaccaggacctttgctacactgatatattgttcacagagcaagagaggggagtaggg
atcaagagcacaccagtgactattgttctgccggacaccaaaggaaagtcttttctcttc
aacatcatcgacacgccaggtcacgtcaatttttctgacgaggtgacagctggccttcgt
atttcggacggcgttgtacttttcattgatgcggctgagggggtgatgctgaacacagag
aggctgatcaagcacgcggtgcaggaaaggctcgcagtgaccgtgtgcatcaacaagata
gaccgactgatcctggagctgaaattgccccctacagatgcttattacaaactccgacat
atcgtagacgaagttaatggtctgatcagcatgtattccaccgatgagaacctcgttctg
tctccccttctggggaacgtgtgtttctccagttcacagtacagcatctgcttcacgctg
ggatcttttgcaaagatttatgcagacacatatggagatatcaattatcaggagtttgca
aagcggctttggggtgacatctacttcaacccgaagacccgcaagttcactaaaaaggcc
ccaacgagcagttcccagcgcagttttgtggagttcattctggagccgctgtacaagatc
ttggctcaggtggtgggggatgtggacacaaccctgcccaggactctggatgaacttggc
atccacctgaccaaagaggaattgaaattgaacattcggcccctcctgcggcttgtctgc
aagaagttctttggggaattcacaggctttgtggacatgtgtgtgcagcatatcccctcc
ccgaaggtgggagccaagacgaaaatcgagcatacctacactggtggcgtcgactctgat
ttaggggaggccatgagtgaatgcgaccctgacggtccgctgatgtgtcacacaacgaaa
atgtacagcacagacgacggcgttcagttccacgcctttggcagagtgcttagtggtacc
atccatgctgggcagcctgtgaaggtccttggagaaaactacaccctggaagatgaggag
gattcccagatctgcactgttggacgcctctggatctctgttgcgaggtatcacattgaa
gtaaaccgggttcctgctggcaactgggtgctgatagaaggggtggaccagcccatagtg
aagactgcaaccgtcacggagcctcggggcaatgaggaggctcagatcttccgtcctttg
aagttcaacaccacatctgtcatcaaaatagctgtagaaccggtcaacccctcggagctc
cccaaaatgttagatggcctccgcaaagtcaacaagagttacccctcgcttactactaag
gtggaagagtctggggagcatgtgatcctggggacgggggagctctacctggattgtgtg
atgcacgatctacggaagatgtattccgagattgatatcaaggtcgccgatccagttgtg
acattctgcgagacggtggtggaaacgtcctccctaaagtgctttgctgagacacccaac
aagaagaacaagatcacgatgattgctgagcctctggagaagggacttgcagaggacatt
gaaaatgaagtggtccagataacgtggaacagaaagaagctgggtgaattcttccagacc
aaatatgactgggatttgctggctgcccgttccatctgggcctttgggccagatgccact
ggcccaaacatcctagtagacgatacgctgccctcagaggtggacaagtcgctgctgggc
tctgtgaaggacagcattgtgcagggatttcagtgggggaccagggaagggcctctctgt
gatgaattgattcgcaacgtgaagtttaagatcctggatgcagtgattgctcaggagccc
ttgcaccggggtggaggacagatcatcccgacggctcggagggtggtgtattccgctttc
ctgatggccacccctcgcctgatggagccctactacttcgtggaggtgcaggctcctgcc
gactgcgtgtctgcggtgtacacggtcctggccaggcggagaggccacgtgacgcaagat
gctccgatcccgggctcccctctctacaccatcaaagccttcatcccagccattgattca
tttgggtttgagacagacttgaggacccacacgcagggacaagccttctcgctctctgtc
ttccaccactggcagattgtgcctggtgaccccttggacaaaagcattgtcatccgaccc
ctggagccccagccagccccgcatctggccagagagttcatgatcaagaccaggcgtagg
aagggcttgagcgaggacgtgagcatcagcaagttcttcgatgaccccatgttgctggag
ctggccaagcaagacgtcgttctcaactaccccatgtga
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