Corynebacterium bovis: CBOVI_04055
Help
Entry
CBOVI_04055 CDS
T09479
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cbov
Corynebacterium bovis
Pathway
cbov03030
DNA replication
cbov03410
Base excision repair
cbov03420
Nucleotide excision repair
cbov03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cbov00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CBOVI_04055 (ligA)
03410 Base excision repair
CBOVI_04055 (ligA)
03420 Nucleotide excision repair
CBOVI_04055 (ligA)
03430 Mismatch repair
CBOVI_04055 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cbov03032
]
CBOVI_04055 (ligA)
03400 DNA repair and recombination proteins [BR:
cbov03400
]
CBOVI_04055 (ligA)
Enzymes [BR:
cbov01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CBOVI_04055 (ligA)
DNA replication proteins [BR:
cbov03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CBOVI_04055 (ligA)
DNA repair and recombination proteins [BR:
cbov03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CBOVI_04055 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CBOVI_04055 (ligA)
MMR (mismatch excision repair)
DNA ligase
CBOVI_04055 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CBOVI_04055 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
WJY77342
LinkDB
All DBs
Position
complement(1021920..1024070)
Genome browser
AA seq
716 aa
AA seq
DB search
MTTEDRNDDHAPTPDRSPGGDLSTAEARTRWDELAEAVRHHRQLYYYGDPEIEDAEFDRL
LRELRDLEERHPEAVTGPSPTEEVAPAPDPTLFRNVDHRERMLSLDNVFSRDELVAWLHR
TPAETYLTELKIDGASINLLYIDGRLDLALTRGDGTTGEDITHNARVIADIPEELTGTDE
FPVPALVEIRGEVYISVEDFATMNSDRQALGLKMFANPRNAAAGAMRQKNPEETAKRPLR
LICHGIGAREGFSPTSQHEAYRAIAAWGLPVSPYTRQVHTVDEVVEQVEWWGEHRHDAAH
EMDGVVVKVDDLGEQRELGATSRAPRWAVAYKYPPEEAMTTLRSIRVGIGRTGRATPYAV
MVPKYVAGSTVEMATLHNPTEAHRKGVMIGDRIMIRKAGEVIPEVLGPVEDHRDGHERQF
VYPSLCPECGTPLAPAKDGDADWRCPQTRYCPGQLQNRLNYLAGRGAFDIDSLGERAAHD
LIASGVLPDEGALFSLTEADLARTNAYTTTTGAVNRAGRTLLATLREVRSTDLWRVLVAL
SIRHVGPTAAKALASRIGSVDRIADASVDEMAQIDGVGPTIAESVRDWFSVPWHREIVEA
WRAAGVRMEDDAVLSGEAEADRPEQVLEGLTVVVTGSLDTYDRTAAKEAVESRGGKASGS
VSRRTSYVVAGEKAGSKLAKAEELGVPVLTEEQFTTLLDGGPDALGIAPGVAGQED
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
gtgactaccgaggaccggaacgacgaccacgcccccacgcccgaccggagccccggcggc
gacctgtccaccgccgaggcccgcacccggtgggacgagctcgcggaggccgtccggcac
caccgtcagctctactactacggggacccggagatcgaggacgccgagttcgaccggctg
ctgcgcgagctgcgcgacctggaggaacggcaccccgaggccgtgacggggccgagcccg
accgaggaggtcgcccccgccccggacccgacgctgttccgcaacgtcgaccaccgggag
cggatgctcagcctggacaacgtcttcagccgggacgagctcgtcgcgtggctccaccgc
accccggcggagacctacctcaccgagctgaagatcgacggcgcgtcgatcaacctgctc
tacatcgacgggcgcctcgacctcgccctcacccggggcgacggcacgacgggcgaggac
atcacgcacaacgcccgggtcatcgccgacatcccggaggagctcaccggcaccgacgag
ttcccggtccccgcgctcgtcgagatccggggcgaggtctacatctccgtcgaggacttc
gcgacgatgaacagcgaccggcaggcgctgggcctgaagatgttcgccaacccccgcaac
gccgcggccggcgccatgcggcagaagaacccggaggagacggcgaagcgcccactgcgg
ctcatctgccacggcatcggcgcccgcgagggcttctcccccacctcccagcacgaggcg
taccgggcgatcgcggcgtgggggctcccggtgagcccctacacccggcaggtgcacacc
gtcgacgaggtcgtcgagcaggtcgagtggtggggtgaacaccggcacgacgccgcccac
gagatggacggggtcgtcgtcaaggtcgacgacctcggggaacagcgggagctcggcgcg
acgtcgcgcgcgccccgctgggccgtggcctacaagtacccgccggaggaggcgatgacg
acgctccggtcgatccgggtcggtatcggccggacggggcgggcgacgccgtacgcggtc
atggtgccgaagtacgtcgccgggtcgacggtcgagatggcgaccctccacaaccccacc
gaggcgcaccgcaagggcgtcatgatcggcgaccgcatcatgatccgcaaggccggcgag
gtcatccccgaggtcctcggccccgtggaggaccaccgggacggccacgagcggcagttc
gtctacccgtcgctgtgccccgagtgcggcaccccgctcgccccggcgaaggacggcgac
gccgactggcgctgcccccagacccggtactgccccggccagctgcagaaccggctgaac
tacctcgccgggcgcggggcgttcgacatcgactccctcggtgagcgggcggcgcacgac
ctcatcgcctccggcgtgctcccggacgagggggcgctgttctccctcaccgaggcggac
ctcgcccggaccaacgcctacacgacgacgaccggggcggtgaaccgcgccgggaggacg
ctgctcgccacgctgcgggaggtccggtcgacggacctgtggcgggtcctcgtcgccctg
tcgatccgccacgtcggtccgacggccgcgaaggccctggcctcgcggatcgggtccgtg
gaccggatcgcggacgcctccgtcgacgagatggcgcagatcgacggcgtcggcccgacc
atcgccgagtccgtgcgggactggttctccgtcccgtggcaccgggagatcgtcgaggcg
tggcgcgcggccggggtgcggatggaggacgacgccgtgctctccggggaggcggaggcc
gaccgccccgagcaggtgctcgaggggctcaccgtcgtcgtcaccggcagcctcgacacg
tacgaccggaccgcggcgaaggaggccgtggagtcccgtggcggcaaggcgtcggggtcg
gtgtcgaggaggacctcgtacgtcgtcgccggggagaaggccgggtcgaagctcgcgaag
gccgaggagctcggcgtcccggtgctcacggaggagcagttcacgacgctgctcgacggc
ggtcccgacgccctcggcatcgcgcccggcgtggccgggcaggaggactga
DBGET
integrated database retrieval system
