Ciconia boyciana (Oriental stork): 140647736
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Entry
140647736 CDS
T10948
Symbol
SMCHD1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1 isoform X1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
cboy Ciconia boyciana (Oriental stork)
Brite
Chromosome and associated proteins [BR:
cboy03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
140647736 (SMCHD1)
DNA repair and recombination proteins [BR:
cboy03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
140647736 (SMCHD1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
140647736
NCBI-ProteinID:
XP_072708782
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Position
2:54155672..54248287
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AA seq
2058 aa
AA seq
DB search
MAAAAGGSRGARRPVLLTPRGIGDRTVFLFDRRREQADPDEKVLSYGKDNYRGFRSAVCQ
AFGIAADENFVITTTNRKEITEDNFSELVQDGITLYLLQSVDQMLLLATKERIDFLPHYD
TLVKSGMYEYYASEGQNPLPFALAELIDNSLSATSQNTGIRSIQIKLLFDDSQGKPAVVV
IDNGRGMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPLPVPRSLNSDISYFGVGGKQA
VFFVGQSARMISKPADSQDVHELVLSKEDFEKKEKNKEAIYSGYIRNRKPSDSTHITSDD
ERFLHNLILEERDKESFTAVVITGVQPDHMQYLKNYFHLWTRQLAHIYHYYIHGPKGNET
NAVTKDISPFNNIDIQISMFEKGKVPKIVNLREIKDDMQTLYINTAADSFEFKAHVEGEG
IVEGIIRYHPFLYDKETYPDDPCFPSNLCSEKVMKHQHFDSRDSNIGIPQRTTQLNADDD
DDDCFIVEKGARGKRPIFECFWNGRLIPYTTVEDFDWCAPPKKRGLAPVECYNRISGTLF
TNDKFQVSTNKLTFMDLELKLKDKNTLFTRIFNGQEQRMKIDREFALWLKDCHEKYDKQI
KFTVFRGVTTRTDLPSKRMQSPWTTYAAIEWDGKTYKTGQLVKTVKTLPIFYGSIEKFFL
YGDHDGDIYATGGEVQIALEPQALYAEMKTVPISKLDRTVSDKAIKKYIENEMARLPDKL
SVTWPEGDELLPNETRFAGTPIGALRIVILNKKGEAMQKLPGTSHGGSKKLLVELKVILH
SPTGNKEIISHISQHGGKWPYWFKKMENLQKLGNYTLKLQVVLNESNADTYAGRPLPSKI
FKFTIIEGKPEKFSVGLLELPFRVGVPFNIPLELQDEFGHATQLTTDIKPILEASGLTLQ
YEEITVGTKCVIKGVTAKGCVNSCQGKNFNLKVTLPGLKEDTQIFKIRLQPGPPRQLKVK
PDSEILKIENGTAFPFQVEVLDESGNITAQPKLVVHCKFVGASNLPVYSVDCSNAGTNIL
TGPVIHVQNIKKDQMLKARIEIPSCKDVPPVEKIIKLLPSSHVARLQVLSMDGQKAIQIK
HQDEINWVAGDVMHNLIFQMYDEGEREIHITPAVAEKIKVNWTPRINREQLIQGLLPDVK
VPTSVKDVRYCLITYLDDHVSLESAFTVRPLPDEPRHIKCKLKGPNTLQMGEELQSEIDV
MITDQYGNQVQTVTSVCVNSLGVSGPGLDKSNLKITWQESTLTMRVKGIRFKPCLLGSKE
LCFAWREFSDFLRVNLTAGSPAKLQFVDWPELEKPVAVINGRELQKPLIVQLCDQWGNPS
PEPNVKISLTKGNNLKIVPSNQQHKTDENGRANLGVISIHAPRGEHTLQLKASYNKTTLD
CPIITLNVLPDPEKPVCLNVKYDKNASFPAGSTFPDFMVSVLSEDDNIIKNINPARISMK
MWEAQSSGTRLPIDVTTFSCSKVKDDKEDGFFYFRDKVVPERVGTYSIQFTFAMDKTNVL
SSDQIIVEVVPNEPVRLLPDSLPATPAVSNVRTLASRTLVKDLYLHVMDEYNNRTGIDLV
GRILAKIKSPNEEDIEIPQFQGKVSTVEFPLDRGSAEINLVLAENSPGRDSTEYILVFEP
DLPALKKPLEPYRLSFMFYNDFKKQQQMATLTRERDQLSQSIGVYRSWFDTTNQLVTEIK
CQVKEAETRETHLKNELKKHQIELPQTNTLQYVDSLIKQKMLDQEGVMKQPRRTCTLPNY
PKGNQDILGKIAHLAQIEDNEAAKVISWHLASDMDCVVTLTTEAARSIFDETQGRQQVLP
LDSIYKKTLPDWNRPLPHLRGGKIFFRPIGNPVFARDLLTFPDNVEHCQTVFGMLLGDTI
IIDNLDAANHYRKEVVKITHCPTLLTREGDRIRSNGKFGGLQNKAPPMDKLRGMVFGAPM
PKLYSTFSGQIDLLQQYRAAVVKLDNVNKDLDLHLQSLNTPEMQKKKQELAEQEKSLKLI
EQKLGMTPSDKVTESLLQPIILDMSDTPIPPKRMRRETVKKLYSSEEWISSPAKKQQQQQ
PLQMSPSELNGNPRKRKA
NT seq
6177 nt
NT seq
+upstream
nt +downstream
nt
atggcagcggcggcgggaggcagccgcggggcccgcaggccggtgctgctgacgcctcgc
ggcatcggggaccgcaccgtgtttctcttcgaccggcgccgggagcaggcggatccggac
gagaaagtgctcagctacggcaaggacaactaccgcggcttccgcagcgccgtctgccag
gcatttggcatagctgctgatgaaaactttgttatcaccacaacaaacaggaaggaaatt
acagaagacaacttcagtgagcttgttcaagatggaattactttgtatctgctacagtca
gttgatcaaatgctgcttttggcaaccaaagagcgaattgacttcctgccacactacgat
acacttgtcaaaagtgggatgtacgagtactatgccagcgaagggcaaaatcctttgcca
tttgcccttgctgagttgattgacaattctctatcagctacatcccaaaataccggtatt
cggagcatacagataaaattgttatttgatgactcccaaggaaaaccagctgttgttgtg
attgataatggaagaggaatgacttctaaacaacttaacaactgggctgtctatagactg
tcaaagtttacaagacaaggtgacttcgagagtgatcattcaggatatgtacgccctttg
ccagtgcctcgcagtttaaatagtgatatctcatattttggagttggaggcaaacaagca
gtgttcttcgttggacagtctgccagaatgataagcaaacctgcagattctcaggatgtt
catgaacttgtcctttctaaagaggattttgaaaagaaggagaaaaacaaagaagcaata
tatagcggatacattagaaacaggaagccatctgactctactcacatcacaagtgatgat
gaaagatttcttcataatctaatattagaagaaagggataaagagagtttcacagcagtt
gtcattacaggtgtacaaccagatcacatgcagtacttgaaaaactactttcatctttgg
acaaggcaactggcacatatctatcactattacatccatggaccaaaaggaaatgaaact
aatgctgtaacgaaagacataagccctttcaacaacatcgacattcagatttcaatgttt
gaaaaaggaaaagtacccaagattgtcaatcttagggagatcaaagatgacatgcagaca
ttgtatataaatactgcagcagatagttttgagtttaaggcacatgttgaaggagaaggt
atagtggaaggcatcatccgatatcatcccttcctgtatgataaagaaacataccctgat
gatccatgttttccatcaaatctttgctccgagaaagtaatgaaacaccagcattttgat
tcaagagattctaacatcggaataccgcagaggacaacacaattaaatgctgatgatgat
gatgatgactgctttatagtcgaaaagggtgccagaggaaaaaggcctatttttgaatgt
ttttggaatggaagattaataccatacacaactgtggaagattttgactggtgcgctcct
ccaaagaagagaggattggcaccagtcgaatgctacaacagaatttctggtacattattt
accaatgataagttccaggtcagcacaaacaaactcactttcatggatctggagctgaag
ctaaaagataagaatactctgttcacaagaattttcaatggacaggagcagcgaatgaaa
attgacagagaatttgctttgtggctcaaagactgtcatgaaaaatatgacaaacaaata
aaattcacagtctttagaggagtaactacacgtactgatttaccatcgaaaagaatgcag
agcccttggacaacgtatgctgcaatagagtgggacgggaaaacatacaaaactggacag
ctggtgaaaactgttaagactcttccaatattctatggaagtattgagaaattttttttg
tatggagaccatgatggggatatatatgccactggaggagaggttcaaattgctttggaa
cctcaggcgttatatgctgaaatgaaaactgttccaatctcaaaacttgacagaacagtg
tctgataaagctattaaaaaatacatagagaatgaaatggcaagacttcccgacaaatta
tcagtaacgtggcctgaaggagatgagttattaccaaatgaaacaagatttgctggtaca
ccaataggagcattaagaatagtaattttgaataaaaaaggagaagcaatgcaaaaactt
ccaggtacaagccacggaggttcaaagaaacttcttgttgaactcaaggttattttacat
tcacctactggcaataaagaaataatttcccatatcagtcagcatggaggcaaatggccg
tactggtttaaaaaaatggaaaatcttcagaaacttgggaactacactttgaaactgcaa
gtagtattgaatgaaagtaatgcagacacttatgcaggaaggcctctaccatctaaaata
tttaaatttactattatagagggcaaaccagagaaattttcagtgggtcttttggagctt
ccttttcgagttggagtaccttttaatattcctttggaattgcaggatgaatttggtcat
gcaacacagttgacaactgacattaaaccaattcttgaagctagtggattgacactgcag
tatgaagaaataactgtgggaacaaagtgcgtcattaagggtgtcactgctaaaggctgt
gtaaatagttgccagggcaagaactttaatctgaaggttactcttcctggtttgaaagaa
gacacacaaatctttaaaataagattgcagcctggtcctcctcgtcaactgaaagtaaaa
ccagattctgaaattctgaagattgaaaatggtacagctttcccctttcaggttgaagta
ctggatgaatcaggaaatataacagcacagccaaagttggtagttcattgtaagtttgta
ggtgcttcaaaccttcctgtgtattctgtggactgcagtaatgcaggaacaaacatttta
actggtccagttatacatgtacagaatatcaagaaagaccagatgctgaaagcaaggatt
gaaatacctagttgtaaagatgtaccaccagtggaaaagattattaaacttcttcctagc
agtcatgttgcaagactacaagtcttaagtatggacggacaaaaagctattcaaattaaa
catcaggatgaaattaactgggttgctggtgatgtcatgcacaaccttatatttcagatg
tatgatgaaggagaaagggagatacacataactccagctgtggcagaaaaaatcaaggtt
aactggacacctagaattaacagagaacagttgattcagggattattacctgatgtaaaa
gtaccaacatcagtaaaagatgtacgttactgtctaattacttatcttgatgaccatgtg
tctttggagagtgcgttcacagtcagaccgcttcctgatgaacccagacacattaaatgt
aaattaaaaggaccaaacacactgcagatgggtgaagaactacaaagtgaaattgatgta
atgattacagatcagtatggaaatcaggttcagacagtgacatctgtgtgtgtaaattcc
ctaggagtttctgggcctggacttgataaatcaaatttgaaaataacttggcaggaaagt
actctaacaatgagagtaaaaggtattcggtttaaaccttgtttacttggaagcaaagaa
ttgtgcttcgcttggcgtgaattttctgactttctcagagtaaatttaactgcaggatcc
cctgctaaattgcagtttgtggattggccagagttagaaaagcctgttgctgtgattaat
ggtagagaattgcagaagccccttattgtacagctgtgtgatcagtggggaaatccatct
cctgaacctaatgtcaaaatcagccttacaaagggtaacaacttaaagattgttccttca
aaccagcaacataaaacagatgaaaatggtagggctaacctgggagttattagtattcat
gcacctaggggagagcacactttacagcttaaagcttcatacaacaagaccacattagat
tgtcctataatcacattaaatgtcctgcctgatcctgagaaacctgtctgcttgaatgtt
aaatatgacaaaaatgcttcttttccagcaggaagtaccttccctgattttatggttagt
gttctttctgaagatgacaacattattaaaaatattaatccagcacggatttctatgaaa
atgtgggaagcacagagcagcggaactaggctaccaattgatgttacaacatttagctgt
agtaaagtgaaggatgacaaggaagatggcttcttttacttcagggataaagtggttcca
gagagagtgggcacttacagtatccagtttacctttgcaatggataagacaaatgtgctc
agcagtgaccagattatagttgaagttgtacctaatgaacctgtacgcttgttacctgat
tctttaccagctactccagcagtttccaatgttcgaactctcgctagccgtacactggtc
aaggatttatacctccatgtaatggatgaatacaacaaccgcactggaattgatctagtt
ggcagaatactagcaaaaattaagagccccaatgaagaggatatagagattccacaattt
caggggaaagtcagtacagttgagtttccacttgacagaggatcagctgaaattaatcta
gtgctggctgaaaacagtcctggaagagatagcactgaatatattcttgtatttgagcca
gatctgccagctttgaaaaaacctttggaaccataccgtctgtcatttatgttttacaat
gatttcaagaagcagcaacagatggcaacacttacaagggagagagaccaattatctcag
tccataggtgtttacagaagttggtttgatactactaatcagcttgtaactgaaatcaaa
tgtcaggtcaaagaagctgaaacaagagaaactcacctgaagaacgaactgaaaaaacac
caaattgaattaccacagacaaacacacttcagtatgtggattctcttataaaacaaaag
atgttggatcaagaaggagtaatgaaacagccaaggcgaacttgtaccctcccaaactat
ccaaaaggcaaccaggatattttaggcaagattgcacatttagctcagattgaggataac
gaagcagcgaaagttatctcttggcatttggcaagcgacatggactgtgtagtcacactg
actactgaagccgctcgttctatttttgatgaaactcaaggtcgacaacaagtgttaccc
cttgattctatctacaagaagacactccctgattggaacaggcccttacctcacttaaga
ggcggaaaaatcttcttcagacctattggaaatcctgtatttgccagagatctgttaaca
tttccagataacgtagagcattgtcaaacagtgtttgggatgctcttgggtgacactatc
attatagataacttggatgctgccaaccattacagaaaagaggttgtaaaaattacacat
tgccctactttgctgactagggaaggagacaggattcgcagcaatggaaaatttggaggc
cttcagaataaagcccctccaatggacaaactcagaggaatggtatttggagcacccatg
ccaaaactttactctactttctctggacagatagatcttcttcagcaataccgtgcagca
gtggtgaaacttgataatgtgaataaggaccttgatttacatttgcagtcacttaacact
ccagaaatgcaaaagaaaaaacaggaacttgccgaacaagagaaaagtctcaagctaata
gaacaaaaattgggtatgactccatcagataaagtcactgaatcattacttcagcctata
attttagatatgtctgacacccccatccctcccaaaagaatgcgaagggaaacggtaaaa
aaattgtatagctcagaagaatggatctcctctcccgcaaagaagcagcagcaacagcaa
ccactgcaaatgtccccttcagaacttaatggaaatccacgaaagagaaaggcatag
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