Ciconia boyciana (Oriental stork): 140659988
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Entry
140659988 CDS
T10948
Symbol
KDM2B
Name
(RefSeq) lysine-specific demethylase 2B isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
cboy Ciconia boyciana (Oriental stork)
Pathway
cboy03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
cboy00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
140659988 (KDM2B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cboy03000
]
140659988 (KDM2B)
04121 Ubiquitin system [BR:
cboy04121
]
140659988 (KDM2B)
03036 Chromosome and associated proteins [BR:
cboy03036
]
140659988 (KDM2B)
Enzymes [BR:
cboy01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
140659988 (KDM2B)
Transcription factors [BR:
cboy03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
140659988 (KDM2B)
Ubiquitin system [BR:
cboy04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
140659988 (KDM2B)
Chromosome and associated proteins [BR:
cboy03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
140659988 (KDM2B)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
140659988 (KDM2B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
JHD
F-box
DUF7885
Cupin_8
JmjC
LRR_At5g56370
LRR_4
Motif
Other DBs
NCBI-GeneID:
140659988
NCBI-ProteinID:
XP_072736416
LinkDB
All DBs
Position
15:9454205..9584441
Genome browser
AA seq
1302 aa
AA seq
DB search
MKLSKKMEAEKDSGRRLRSIGRRRYDENEDLSDVEEIVSIRSFNLEEKLKSKMYHGDFVH
AMDGKDFTFEYVQREALRVPLIFRNKDGLGIKMPDPDFTVRDVKLLVGSRRIVDVMDVNT
QRGVEMSMSQFVRYYETPEAQREKLYNVISLEFSHTKLENIVKRPNVVDLVDWVDNMWPQ
HLKERQTDATNAISEMKYPKVKKYCLMSVKGCFTDFHIDFGGTSVWYHVFRGGKIFWLIP
PTLQNLELYEEWVLSGKQSDIFLGDRVERCQRIELKQGYTFFIPSGWIHAVYTPVDSLVF
GGNILHSFNVPMQLRIYEIEDRTRVHAKFRYPFYYEMCWYVLERYVSCVTQRCHLSKEYQ
KESMLIDAKRKRSTDSYSSDSWLDMDEESCDAHIREEKDDSLDKKSRSLVDGSSSPNSTH
SEGKEGAGRKQKATVMRYLKRTLSNESDDSVKSTTPTDYPKTPTGSPATEVSTKWTHLTE
FELKGLKALVEKLESLPENKKCVPEGIEDPQALLEDMKNILKEHADDDQNLAISGVPVVS
WPKKTTKNRAVGRPKGKLGAASAVKLAANRTTAGARRRRTRCRKCEACLRTECGECHFCK
DMKKFGGPGRMKQSCIMRQCIAPVLPHTAVCLVCGEAGKEDTVEEEESKFNLMLMECSIC
NEIIHPGCLKVKESDGVVNDELPNCWECPKCNHAGKTGKAYKQKRGPGFKYASNLPGSLL
KEQKMNRDNKEVTDAAKRKGDCEETPRRKSEEHSKKTQVDSILRRKSDEVHLWRKRKFEK
PQEPTMRKRLKLGREEKLFRKKRRSWKAPDDRTAMIKPLRRLKQEPEDDLPEAPPRSKDS
DQSRSSSPTAGPSTEGAEPRDKKKFKMRRKRRLPNKELSKELSKELNQEIQKTENSLANE
NHQPIKSEPESENEEPKRALNNSERLHRFSKGLNGTPRELRHQLIPSLRSTPRGITRPPP
SLSPPKCIQMERHVIRPPPISPPPDSLPLDDGAAHVMQREVWMAVFSYLSHRDLCICMRV
CKTWNRWCCDKRLWTKIDLNHCKSITPLMLSGIIRRQPVTLDLSWTNISKKQLSWLINRL
PGLRDLLLSGCSWIAVSALCSSSCPLLRTLDVQWAEGLKDAQMRDLLSPPTDNRPGCNGC
TLESMETLSSSSGKEQFCGSCHIRPDISSGQIDNRSKLRNIVELRLAGLDITDASLRLII
RHMPLLSKLNLSYCNHVTDQSINLLTAVGTTTRDSLTEINLSDCNKVTDQCLSYFKRCGN
ICQIDLRYCKQVTKEGCEQFIAEMSVSVQFGQVEEKLLQKLS
NT seq
3909 nt
NT seq
+upstream
nt +downstream
nt
atgaaactctccaaaaaaatggaggcagagaaagactctggaagaagattgcgatctatt
ggcagaaggcgatacgatgagaacgaggacctctcggacgtggaggaaattgtcagcatc
aggagtttcaatttggaagagaaattaaagagtaaaatgtaccacggggatttcgtgcat
gccatggacgggaaagattttacttttgagtatgtgcaaagagaagctctcagagttccc
cttatcttcagaaataaggatggactgggaattaaaatgcctgacccggatttcaccgtc
agagatgtgaagctattagtgggaagccgacggatagtggacgtgatggatgtgaacaca
cagagaggtgttgaaatgagcatgtctcaatttgtgagatactatgaaacaccagaggcc
cagcgtgaaaaactctacaatgtcatcagcctggagttcagtcacacgaagctggagaac
attgtcaagcgccccaatgtggtggacttagttgactgggtggataatatgtggccgcag
catttgaaggagagacagacggatgctaccaatgctatttcagagatgaaataccccaaa
gtgaaaaagtactgtttgatgagtgtgaaaggatgcttcactgattttcacattgatttt
ggtggcacttcagtgtggtatcacgttttccgtggggggaagatcttctggctcattccg
cctactctgcagaatctagaactttacgaagaatgggttctctcaggaaagcagagtgat
atctttctgggagacagggtggaacgatgccaaagaattgagctgaaacaaggctatacg
ttcttcattccttcagggtggatacatgcggtttatactccagtagattctctggtgttt
ggtggaaatatcctgcatagctttaatgttcccatgcagcttcgcatctatgaaattgag
gacagaacaagggtgcatgccaaattccgttatcctttctactatgaaatgtgctggtat
gttctggagagatacgtgtcctgtgtgacccagcgctgccacctcagcaaagagtaccag
aaagaatcaatgttaattgatgcaaaaagaaaacgcagcacagacagctattcatcagat
tcgtggttagacatggatgaagaatcttgtgatgcccatatccgggaggagaaggacgac
agcttggataagaaatccagatccttggtggatggctcctcctcacccaacagcacacac
tcagaagggaaggagggtgcaggaagaaaacaaaaagccacagtaatgagatacctaaaa
agaactttgtctaatgagtcagatgacagtgtaaaatcaacgacccccacggactatccc
aaaacaccaacggggtctccagctacagaagtttcaaccaaatggactcacctcacagaa
tttgaactgaagggtttaaaagccctggtggaaaagcttgaatctctcccagagaacaag
aagtgtgttccagaaggcattgaagatccgcaggctctcctagaggacatgaagaacata
ctgaaggaacatgctgatgatgaccaaaatcttgccatttcgggtgtccctgtggtcagc
tggcccaagaagaccacaaagaacagggcagtcggacggcccaaagggaaactgggcgct
gcttctgcggtcaagctcgcagctaatcggacaaccgctggagcacgtcggaggaggacg
cgatgccgcaagtgcgaggcgtgtctgcggacagagtgtggcgagtgtcacttctgcaaa
gacatgaagaaatttgggggacctggcaggatgaaacagtcctgcattatgaggcagtgt
atcgcaccggtgttgcctcatactgctgtgtgtctggtgtgtggagaagctgggaaagag
gacactgtggaagaggaggagagcaagtttaatctcatgctaatggaatgttccatttgt
aatgaaataatacacccaggatgccttaaggtgaaggaatcggatggtgtggttaacgat
gagctgccgaactgctgggagtgtccaaagtgcaaccatgcagggaaaactggaaaagcg
tacaagcaaaagcgcggaccaggattcaaatacgcatcaaatctcccaggctcattgctg
aaggaacagaaaatgaacagagacaataaggaagtaacagatgctgcaaaacggaaaggg
gattgtgaagaaactcccaggcggaaatcagaggaacattccaaaaagactcaagttgac
tcaatactgaggagaaaatcagacgaagtgcatctgtggaggaaaaggaaatttgagaaa
ccccaggaacccactatgagaaagcggctaaaacttggaagagaagagaaactcttcagg
aagaagcggcgatcatggaaggctccagatgaccgaactgccatgatcaaacccctgcgg
cgcctcaagcaggagccagaggatgacctgccagaagcacctcccaggtccaaggatagt
gaccagtcacggtccagctcgcccactgcaggtcccagcacagagggtgccgagcccagg
gacaagaagaagttcaagatgaggaggaaaaggcggcttcccaataaggaactgagcaag
gagctcagcaaggagctcaaccaggagatccaaaaaaccgagaacagccttgccaatgag
aatcaccaacccatcaaatctgaacctgagagtgagaatgaggaacctaagcgtgctttg
aacaacagcgagagactccataggttcagcaaagggttaaacgggactccccgagagctg
aggcaccagctcatccccagcctgcgaagcacacctcggggaataacccggccaccgcct
tcgctctctcctcccaaatgcattcagatggaacggcacgttatccggccgcctcccatc
agcccccctccggactcactccccctggatgacggggcagcccacgtgatgcagcgggaa
gtctggatggctgtctttagctacctcagtcatagggacttgtgcatctgtatgagagtt
tgcaagacctggaacagatggtgctgtgacaaaagattatggaccaaaatagatttaaac
cattgtaaatccatcactccacttatgctcagtggcattattaggagacagcctgtaacc
cttgatcttagctggacaaatatatctaaaaagcagctgagttggcttatcaacagactg
ccaggtcttcgagacctgctgttgtcagggtgctcatggatagcagtgtcggcactttgt
agttccagttgtcctttactccgaacgctggacgtgcagtgggcagaaggcctgaaagac
gcacaaatgagagacctcttgtcgccacccacagataaccggccaggctgcaacgggtgt
actttagagagtatggaaacactttcttccagttcagggaaggagcagttctgtgggtca
tgccacattcgcccggatatcagctcaggtcagatcgacaaccggagtaaactacggaac
atagttgagctgcgtttggctggtctggatattacagatgcttctttgcggctgatcata
aggcacatgcctctgctctccaaactcaatcttagttactgtaatcacgtgacagatcag
tctattaacctgctgaccgcggtcggaaccaccacgcgggattcattaacagaaattaat
ttatcagactgcaataaggttactgaccagtgcctgtcttacttcaaacgttgtggaaac
atctgccagatcgacctgaggtactgcaagcaggtgacaaaagaaggctgcgagcagttt
atagcagaaatgtcagtaagtgttcagtttgggcaagtggaagaaaaacttctgcaaaaa
ctgagttag
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