Caenorhabditis briggsae (nematode): CBG_12304
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Entry
CBG_12304 CDS
T01054
Symbol
Cbr-nth-1
Name
(RefSeq) Protein CBR-NTH-1
KO
K10773
endonuclease III [EC:3.2.2.-
4.2.99.18
]
Organism
cbr
Caenorhabditis briggsae (nematode)
Pathway
cbr03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
cbr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CBG_12304 (Cbr-nth-1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cbr03400
]
CBG_12304 (Cbr-nth-1)
Enzymes [BR:
cbr01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
CBG_12304 (Cbr-nth-1)
DNA repair and recombination proteins [BR:
cbr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
CBG_12304 (Cbr-nth-1)
Prokaryotic type
CBG_12304 (Cbr-nth-1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HhH-GPD
HHH
RecR_HhH
Amdase
Motif
Other DBs
NCBI-GeneID:
8584705
NCBI-ProteinID:
XP_045094822
WormBase:
CBG12304
LinkDB
All DBs
Position
III:complement(<12735677..>12739470)
Genome browser
AA seq
289 aa
AA seq
DB search
MPKRLIATSSSSSSSSSESKIVKAEDSGNSSGNSENATWRRDVALIQKMRADMVAPVDTM
GCHKLADPLAEPKIHRFQVLVALMLSSQTRDEVNAAAMKRLKDHGLSIQTIRAFPVSDLE
KILCPVGFYKRKAVYIQQTAKILEDSYSGDIPDTLDGLCSLPGVGPKMANLVMQIAWGKC
EGIAVDTHVHRISNRLGWIKTTTPEKTQKALESLLPRSEWQPINHLLVGFGQMLCQPVRP
KCATCLCRLTCPSSTAKTGEKVEKLAKKSRKTVKIEKEDAFEVKEEPDF
NT seq
870 nt
NT seq
+upstream
nt +downstream
nt
atgcctaagcgtctgattgccacgtcatcgtcttcttcttcttcttcttctgaatccaaa
attgtcaaagctgaagattctggaaattcttctggaaattctgaaaatgccacgtggcgc
cgcgacgtggcgcttattcaaaaaatgagagccgatatggtggcgccagtcgacactatg
ggatgccataagcttgccgatccattggcagagccaaaaattcatcgtttccaagtgctc
gtcgccctaatgctctccagtcaaactcgtgacgaagtaaacgccgccgcgatgaaacga
ctcaaagatcacggactgtcgattcagacgattcgggcgtttccagtgtcggacttggag
aagattttgtgtccagtcgggttttataagcgcaaagccgtctatatccaacaaacggcg
aaaattctagaagacagctattcaggagacattccagacaccctagatggcctgtgctct
ctgccaggcgtcggaccgaaaatggcgaatttggtgatgcaaatcgcgtggggaaagtgt
gagggcatcgctgttgacacacatgttcatcgcatttccaatcgattgggctggatcaaa
accacgacccccgaaaagacccaaaaagccctggaatctcttctcccacgaagcgaatgg
caaccgattaatcatctcctcgtgggctttggacagatgctctgtcagccagtccgccca
aagtgtgccacgtgtctttgccggctcacttgtcccagttcgacagcgaaaaccggcgaa
aaagtggaaaaattggcgaaaaaatcgagaaaaacggtcaaaattgaaaaggaagatgct
ttcgaagtcaaggaggagcccgatttttaa
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integrated database retrieval system