Corvus brachyrhynchos (American crow): 103615925
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Entry
103615925 CDS
T08418
Symbol
KDM2B
Name
(RefSeq) lysine-specific demethylase 2B isoform X7
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
cbrc
Corvus brachyrhynchos (American crow)
Pathway
cbrc03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
cbrc00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
103615925 (KDM2B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cbrc03000
]
103615925 (KDM2B)
04121 Ubiquitin system [BR:
cbrc04121
]
103615925 (KDM2B)
03036 Chromosome and associated proteins [BR:
cbrc03036
]
103615925 (KDM2B)
Enzymes [BR:
cbrc01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
103615925 (KDM2B)
Transcription factors [BR:
cbrc03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
103615925 (KDM2B)
Ubiquitin system [BR:
cbrc04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
103615925 (KDM2B)
Chromosome and associated proteins [BR:
cbrc03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
103615925 (KDM2B)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
103615925 (KDM2B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
JHD
F-box
Cupin_8
JmjC
LRR_4
Motif
Other DBs
NCBI-GeneID:
103615925
NCBI-ProteinID:
XP_008632270
LinkDB
All DBs
Position
Unknown
AA seq
1253 aa
AA seq
DB search
MKLSKKMEAKKDSGRRLRCIGRRRYDENEDLSDVEEIVSIRSFNLEEKLKSKMYHGDFVH
AMDGKDFTFEYVQREALRVPLIFRNKDGLGIKMPDPDFTVRDVKLLVGSRRIVDVMDVNT
QRGVEMSMSQFVRYYETPEAQREKLYNVISLEFSHTKLENIVKRPNVVDLVDWVDNMWPQ
HLKERQTDATNAISEMKYPKVKKYCLMSVKGCFTDFHIDFGGTSVWYHVFRGGKIFWLIP
PTLQNLELYEEWVLSGKQSDIFLGDRVERCQRIELKQGYTFFIPSGWIHAVYTPVDSLVF
GGNILHSFNVPMQLRIYEIEDRTRVHAKFRYPFYYEMCWYVLERYVSCVTQRCHLSKEYQ
KESMLIDAKRKRSTDSYSSDSWLDMDEESCDAHLQEEKDDSVDKNSRSLVDGSSSPNSTH
SEGKEAAGRKQKATVMRYLKRTLSNESDDSVKSTTPTDYPKTPTGSPATEVSTKWTHLTE
FELKGLKALVEKLESLPENKKCVPEGIEDPQALLEDMKNILKEHADDDQNLAISGVPVVS
WPKKTTKNRAVGRPKGKLGAASAVKLAANRSTAGARRRRTRCRKCEACLRTECGECHFCK
DMKKFGGPGRMKQSCIMRQCIAPVLPHTAVCLVCGEAGKEDTVEEEESKFNLMLMECSIC
NEIIHPGCLKVKESDGVVNDELPNCWECPKCNHAGKTGKQKRGPGFKYASNLPGSLLKEQ
KINRDNKEVPDAAKRKGDCEETPRRKSEEHSKKAPVESILRRKSDEVHLWRKRKFEKSQE
PTMRKRRRSWKAPDDRTAMIKPLRRLKQEPEDELPEAPPRSKDSDQSRSSSPTAGPSTEG
AEPRDKKKFKMRRKRRLPNKELSKELSKELNQEIQKTENSLANENHQPIKSEPESENEEP
KRALNNSERLHRFSKGLNGTPRELRHHQLMPSLRSTPRGIARPPPSLSPPKCIQMERHVI
RPPPISPPPDSLPLDDGAAHVMQREVWMAVFSYLSHRDLCICMRVCKTWNRWCCDKRLWT
KIDLNHCKSITPLMLSGIIRRQPVTLDLSWTNISKKQLSWLINRLPGLRDLLLSGCSWIA
VSALCSSSCPLLRTLDVQWAEGLKDAQMRDLLSPPTDNRPGQIDNRSKLRNIVELRLAGL
DITDASLRLIIRHMPLLSKLNLSYCNHVTDQSINLLTAVGTTTRDSLTEINLSDCNKVTD
QCLSYFKRCGNICQIDLRYCKQVTKEGCEQFIAEMSVSVQFGQVEEKLLQKLS
NT seq
3762 nt
NT seq
+upstream
nt +downstream
nt
atgaaactctccaaaaaaatggaggcaaagaaagactctggaagaagattgcgctgcatc
ggccgaaggcggtacgatgagaacgaggacctctcggacgtggaggaaattgtcagcatc
aggagtttcaatttggaagagaaattaaagagtaaaatgtaccacggggatttcgtgcat
gccatggacggcaaagattttacttttgagtatgtgcaaagagaagctctcagagttccc
ctcatcttcagaaataaggatggactgggaattaaaatgcctgacccagatttcaccgtc
agagatgtgaagctattagtgggaagccgccggatcgtggatgtgatggatgtgaacaca
cagagaggagtggagatgagcatgtctcagttcgtgaggtactatgagaccccagaggcc
cagcgggagaagctctacaacgtcatcagcctggagttcagtcacaccaagctggagaac
attgtcaagcgccccaacgtggtggatttagttgactgggtggataatatgtggccacag
catttgaaggagagacagacggatgctaccaatgctatttcagagatgaaataccccaaa
gtgaaaaagtactgtttgatgagtgtgaaaggatgcttcactgattttcatattgatttt
ggtggcacttcagtgtggtatcacgttttccgtggggggaagatcttctggctgattcca
cctactctgcagaatctagaactttatgaagaatgggttctctcaggaaagcaaagtgat
atctttctgggagacagggtggaacggtgccaaagaattgagctgaaacaaggctacacg
ttcttcattccttcagggtggatacatgcggtttatactccagtagattctctggtgttt
ggtggaaatatcctgcatagctttaatgttcccatgcagcttcgcatctatgaaattgag
gacagaacaagggtgcatgccaaattccggtatcctttctactatgaaatgtgctggtat
gttctggagagatacgtgtcctgtgtgacccagcgctgccacctcagcaaagagtaccag
aaagaatcaatgttaattgatgcaaaaagaaaacgcagcacagacagctactcatcagat
tcgtggttagacatggatgaagaatcttgtgatgcccatctccaggaggagaaggatgac
agcgtagataagaactccagatccttggtggatggctcctcctcacccaacagcacgcac
tcggaagggaaggaggctgcagggaggaaacaaaaagccacagtaatgaggtacctaaaa
agaactttgtctaatgagtcagatgacagcgtaaaatcaacaaccccgacggactatccc
aaaacacccacggggtctccagctacagaagtttcaaccaaatggactcacctcacagaa
tttgaactgaaaggtttaaaagccctggtggaaaagcttgaatctctcccagagaacaag
aagtgtgttccagaaggcattgaagacccacaggctctcctggaggacatgaagaacata
ctgaaggaacacgctgatgatgaccaaaatcttgccatttcgggtgtccctgtggtcagc
tggcccaagaagaccacaaagaacagggcagtcgggcggcccaaggggaagctgggtgct
gcctctgcggtgaagctcgcggccaaccggagcacggcgggcgcccggcggcggaggacg
cgatgccgcaagtgcgaggcgtgtctgcggacggagtgcggcgagtgccacttctgcaag
gacatgaagaagttcggggggcccggcaggatgaagcagtcctgcatcatgaggcagtgc
atcgctccggtgctgcctcatactgctgtgtgtctggtgtgcggagaagctgggaaagag
gacactgtggaagaggaggagagcaagtttaatctcatgctaatggaatgctccatttgt
aatgaaatcatacacccaggatgccttaaggtgaaggaatcggatggtgtggttaacgat
gagctgccgaactgctgggagtgtccaaagtgcaaccatgcagggaaaactggaaaacaa
aagcgcggaccaggatttaaatacgcatcaaatctcccgggctcgttgctgaaggagcag
aaaattaacagagacaacaaggaagtgccagatgctgccaaacggaaaggggactgtgag
gagactcccaggcggaaatcagaggaacattccaaaaaggctccagttgagtcaatcctg
aggagaaagtctgacgaagtgcatctgtggaggaaacggaaattcgagaaatcccaggaa
cccacgatgagaaagcggcggcgatcgtggaaggccccggatgaccgaactgccatgatc
aaacccctgaggcgcctcaagcaggagcccgaggatgagctgccagaagcaccccccagg
tccaaggatagtgaccagtctcggtcgagctcgcccacagcagggcccagcacggagggt
gccgagcccagggacaagaagaagttcaagatgaggaggaaaaggcggcttcccaataaa
gaactgagcaaggagctcagcaaagagcttaaccaggagatccaaaaaaccgagaacagc
cttgccaatgagaaccaccaacccatcaaatctgaaccggagagcgagaacgaggaaccc
aagcgtgcgttgaacaacagcgagagactccataggttcagcaaagggttgaacgggact
ccccgggagctgagacaccaccagctcatgcccagcctgcgcagcaccccccggggaata
gcccggcccccgccctcgctgtcgccccccaaatgcatccagatggagcggcacgtgatc
cggccacctcccatcagcccccctccggactcgctccccctggatgacggggcagcccac
gtgatgcagagggaagtctggatggctgtctttagctacctcagtcatagagacttgtgc
atctgtatgagagtttgcaagacctggaacagatggtgctgtgacaaaagattatggacc
aaaatagatttaaaccattgtaaatccatcactccacttatgcttagtggcattattagg
agacagcctgtaacccttgatcttagctggacaaatatatctaaaaagcagctgagttgg
cttatcaacagactgccaggtctgcgggacctgctgttatcagggtgctcatggatagca
gtgtcggcactttgtagctccagttgtcccttgctgcgaactctggacgtgcagtgggca
gaaggactgaaagacgcacaaatgagagacctcctgtccccgcccacggacaaccggcca
ggtcagatcgacaaccggagtaagctacggaacatcgtggagctgcgcctggccggcctg
gatatcacagatgcttcgctgcggctgatcatcaggcacatgcccctgctctccaaactc
aatctcagttactgtaaccacgtgacagatcagtctattaacctgctgaccgccgttgga
accaccacgcgggattcgttaacggaaattaatttatcagactgcaataaggtcactgat
cagtgcctgtcttacttcaaacgttgtgggaacatctgccagatcgacctgaggtactgc
aagcaagtgacgaaggagggctgcgagcagttcatagcggagatgtccgtaagcgtccag
ttcgggcaggtggaagaaaaacttctgcaaaaactgagttag
DBGET
integrated database retrieval system
