Corvus brachyrhynchos (American crow): 103618421
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Entry
103618421 CDS
T08418
Symbol
SMCHD1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
cbrc
Corvus brachyrhynchos (American crow)
Brite
KEGG Orthology (KO) [BR:
cbrc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cbrc03036
]
103618421 (SMCHD1)
03400 DNA repair and recombination proteins [BR:
cbrc03400
]
103618421 (SMCHD1)
Chromosome and associated proteins [BR:
cbrc03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
103618421 (SMCHD1)
DNA repair and recombination proteins [BR:
cbrc03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
103618421 (SMCHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMCHD1_S5
SMC_hinge
HATPase_c_3
HATPase_c
C9orf72-like
Motif
Other DBs
NCBI-GeneID:
103618421
NCBI-ProteinID:
XP_017593802
LinkDB
All DBs
Position
Unknown
AA seq
1929 aa
AA seq
DB search
MLLLATKERIDFLPHYDTLVKSGMYEYYASEGQNPLPFALAELIDNSLSATSRNTGIRSI
QIKLLFDDSQGKPAVAVIDNGSGMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPLPVP
RSLNSDISYFGVGGKQAVFFVGQSARMISKPAASQDVHELVLSKEDFEKKEKNKEAIYTG
FIQNRKPSDSTHITSDDERFLHNLISEERDKESFTAVVITGVQPDHMQYLKNYFHLWTRQ
LAHIYHYYIHGPKGNEANAVTKDISPFNNIDIQISMFEKGKVPKIVNLREIKDDMQTLYI
NTAADSFEFKAHVEEEGIVEGIIRYHPFLYDKETYPDDPCFPSRLNDDDDDDCFIVEKGA
RGKRPIFECFWNGRLIPYTTVEDFDWCAPPKKRGLAPVECYNRISGALFTNDKFQVSTNK
LTFMDLELKLKDKNTLFTRIFNGQEQRMKIDREFALWLKECHEKYDKQIKFTVFKGITVR
SDIPSKRMQSPWTTYAAIEWDGKTYKTGQLVKTTKTHPIFYGSIEKFFLYGDHDGDIFAT
GGEVQIALEPQALYAETKIIPISKLDRTVSDKVVKKYIEDEMARLPDKLSVTWPEGDELL
PNDTRFAGTPIGALRIEILNKKGEAMQKLPGTSHGGSKKLLVELKVILHSPTENKEIISH
ISQHGGKWPYWFKKMENLQKLGNYSLKLQVVLNESNADTYAGRPLPSKVFKFTIVEGKPE
KFLVGLLELPFRIGVPFNIPLELQDEFGHPTHLTTRLRPILEASGLTLKHEDIPVATKCI
IKGVTAKGCINSCQGKNFNLKITLPGLKEDTQVIKIRLQPGPPRQLKVKPDSEILKIENG
TAFPFQVEVLDESGNITAQPELIVHCKFLGASDLPVYSVDCSNGGTNILTGPVIHVQNIK
KDQMLKARIEVLNCKDVPPVEKIIKLLPSSHVARLQVLSMNGQKALQIKHQDEITCVAGH
VMNKLIFQMYDEAEREIPITAAAAEKIKVNWTPKIDRELLMQGLLPDVKVPTSVKDVRYC
LITYLDEHVSLESAFTVRPVPDEPKHIKCKLKGSNTLQMGEELQSEIDVMITDQFGNQVQ
TVTSACVNSLGVSGPGLDKSNLKVTWQESTQTMKVKGIRYKPCLLGSKELCFAWREFSDF
IRVNLVAGSPAKLQFVDWPELEKQQPVAVINGRELQRPLIVQLCDQWGNPAPESNVKISL
TKSNNLKIVPSNLQHKTDDTGRANLGVFSIHAPRGEHILQLKASYNMAILDCLVITIKVL
PDPEKPVCLNVKYDKSPSFPAGGTFPDFMVSVLSEDDTIIKNINPARISMKMWEAQNSRV
RTPIDVTTFSCSKVKDDKEDGFFYFRDKVVPERVGTYIVQFTFAMDKTNTLNSEQIIVEV
VPNDPVRLLPDSLPATPAVSNVRALTSRTLVKDLYLHLMDEYNNHTGLDLVGRIIAKIKS
PNEEDIEIPQFQGKVNTVEFPLESGSAEINLVLAEDSPGRDSTEYILVFEPHLPALKTPL
EPYCLSFMFYNDSKKQQLMATLTREKDQLSKSIDLYRKMFDTTNQLVAEMKCQVKEAETR
EALLRSELKKHQIELPPTNILQYVDSLLKKKMSEQEGVMKQPRRTCTLPNYPKGNQDILG
KIAHLAQIEDNEAAKVISWHLASDMDCVVTLTTEAARSIFDETQGRQQVLPLDSIYKKTL
PDWSRPLPHLRNGRTFFRPVGNPVFARDLLTFPDNIEHCQTVFGMLLGDTIIIDNLDAAN
HYRKEVVKITHCPTLLTREGDRIRSNGKFGGLQNKAPPMDKLRGMVFGAPMPKLYSTFSG
QIDLLQQYRAAVVKLDNVNKDLDLHLQSLNTPEMQKKKQELAEQEKSLKLVKQKLGMTPA
LSDKGAESLLQPIMLDISDTPIPPKRMRRETVKKLYSSEEWISSGKQQQQPVLQMTPSEL
NGTPRKRKA
NT seq
5790 nt
NT seq
+upstream
nt +downstream
nt
atgttgcttttggcaaccaaggaacgaattgactttctgcctcactacgatacgcttgtc
aaaagtggcatgtacgagtactatgccagcgagggccaaaatcctttgccatttgccctt
gctgagttgattgacaattctctgtcagctacatcccgaaatactggtattcggagtata
cagataaaattgttatttgatgattcccaaggaaaaccagctgttgctgtgatcgataat
ggaagtggaatgacttctaaacagcttaacaactgggctgtttatagattgtcaaagttt
acaagacaaggtgactttgaaagtgatcattcaggatatgtacgccctttgccagtgcct
cgtagtttaaatagtgatatttcgtatttcggagttggaggcaaacaagcagtgttcttc
gttggacagtctgccagaatgataagcaaacctgcagcatctcaggatgttcatgaactt
gtcctttctaaagaggattttgaaaagaaggagaaaaacaaagaagcaatatatactgga
ttcattcaaaacagaaagccatctgactctactcacatcacaagtgatgatgaaagattt
cttcataatctaatatcagaagaaagggataaagagagtttcacagcagttgtcattaca
ggtgtacaaccagatcacatgcagtacttgaaaaactactttcatctttggacaaggcag
ctggcacatatttatcactattatatccatggaccgaaaggaaatgaagctaatgctgta
acaaaagacataagccctttcaacaacatcgacattcagatttcaatgtttgaaaaagga
aaagtaccaaagattgtcaatctgagggagatcaaagatgacatgcagacattgtatata
aatactgcagcagatagttttgagtttaaggcacatgttgaagaagaaggtatagttgaa
ggtatcatccgataccatcccttcctgtatgataaagaaacataccctgatgatccatgt
tttccatcaaggttaaatgatgatgatgatgatgactgctttatagtagaaaaaggtgcc
agaggaaaaaggcctatttttgaatgcttttggaatggaagattaataccatacacaact
gtggaagattttgactggtgtgctcctccaaagaagagaggattggcaccagttgagtgc
tacaacagaatttctggtgcattgtttaccaatgataagttccaggtcagcacaaacaaa
ctcactttcatggatctggagctgaagctaaaggataagaatactctgttcacgagaatc
ttcaatggacaggagcagcgaatgaaaattgacagagaatttgctctgtggctcaaagag
tgtcatgaaaaatacgacaaacagataaaattcacagtctttaaaggaataactgtacgt
agtgatataccatccaaaagaatgcagagcccttggacaacatacgctgcaatagagtgg
gatggaaaaacatacaaaactgggcagctggtgaaaaccactaagactcatccaatattc
tatggaagtattgagaaattttttttgtatggagaccatgatggggatatatttgccact
ggaggagaggttcaaattgctttggaaccacaagcattgtatgctgaaacaaaaattatt
ccaatctcaaaacttgacagaacagtgtctgacaaagttgttaaaaaatacatagaggat
gaaatggcaaggcttcctgacaaattatcagtaacatggcctgaaggagatgagttgtta
ccaaatgatacaagatttgctggtacaccaataggagcgttaagaatagaaattttgaat
aaaaaaggagaagcaatgcaaaaacttccaggtacaagccacggaggttcaaagaaactt
cttgttgaactcaaggttattttgcattcacctactgagaataaagaaataatttcacat
atcagtcagcatggaggcaagtggccgtactggtttaaaaaaatggaaaatcttcagaaa
cttggtaactactccttgaaacttcaagtagtattgaatgaaagtaatgcagacacttat
gcaggaaggcctctaccatctaaagtatttaaatttactattgtagagggcaaaccagag
aaatttttggtgggtcttttggagcttccttttcgaattggagtaccttttaatattcct
ttggaactgcaggatgaatttggtcatccaacgcacttgacaactcgccttagaccaatt
ctggaagctagtggattaacattgaagcatgaagacatacctgtggcaacaaagtgtatc
attaagggtgttactgctaaaggctgtataaatagttgccaaggcaagaattttaatctg
aagattactcttcctggtttaaaagaagatacacaagtcattaaaataagattgcagcct
ggccctcctcgtcagttgaaagtaaaaccagattcagaaattctgaagattgaaaatggt
acagcttttccctttcaggttgaagtactggatgaatcaggaaatataacagcacagccg
gagctgattgttcattgtaagtttttaggtgcttcagaccttcctgtgtattctgtggac
tgcagtaatggaggaacaaacattttaactggtccagttatacatgtacagaatatcaag
aaagaccagatgctgaaagcaaggattgaagtacttaattgcaaagatgtgccaccagta
gaaaagatcataaagcttcttcctagcagtcatgttgcaagactacaggtcttaagtatg
aacggacaaaaagctcttcagattaaacatcaggatgaaatcacttgtgttgctggccat
gtcatgaacaaacttatatttcagatgtatgatgaagcagaaagggaaatacccataact
gcagctgctgcagaaaaaatcaaggttaactggacacccaaaattgacagagagctgttg
atgcagggattattacctgatgtaaaagtaccaacctcagtaaaagatgtacgttactgt
ctaattacttaccttgatgagcacgtgtctttggagagtgcattcacagtcagaccagtt
cctgatgaacccaaacacattaaatgtaaactaaaaggatcaaacacactgcagatgggt
gaagaactgcagagtgaaattgatgtaatgattacagatcagtttggaaatcaggttcag
acagtgacatctgcatgtgtaaattccctaggagtttctgggcctggacttgataaatca
aatttgaaagtaacttggcaggaaagtactcaaacaatgaaagtaaaaggtattagatat
aaaccctgtttacttggaagcaaagaattgtgcttcgcttggcgtgaattttctgacttt
atcagagtgaatttagtagcaggatcccctgctaaattgcagtttgtggattggccagag
ttagaaaagcaacagcctgttgcagtgattaatggtagagaattgcagaggccccttatt
gttcagttgtgtgatcagtggggaaatccagctcctgaatctaatgtgaaaatcagcctt
acaaagagtaacaacttaaagattgttccttcaaacttgcaacataaaacagatgacact
ggtagggctaacctgggagtttttagtattcatgcacctaggggagagcacattttacag
cttaaagcctcatacaacatggccatattagattgtcttgtaatcacaataaaagtcctg
cctgatcctgagaaacctgtctgcttgaatgttaaatatgacaaaagtccttcttttcca
gcaggaggtaccttccctgattttatggttagtgttctttctgaagatgacaccattatt
aaaaatattaatccagcacggatttctatgaaaatgtgggaagcacagaacagccgggtt
aggacaccaattgatgttacaacgtttagctgtagtaaagtgaaggatgacaaggaagat
ggcttcttctacttcagggataaagtcgttccagagagagtgggcacttacattgtccag
tttacctttgcaatggataagacaaatacgctcaacagtgaacagattatagttgaagtt
gtacctaatgaccctgtacgcttgttacctgattctttaccagctactccagcagtttcc
aatgttcgagctcttaccagccgtacactggtcaaggatttatacctccatttaatggat
gaatacaacaaccacactggacttgatctagttggcagaataatagcaaaaatcaaaagc
cccaatgaagaagatatagagatcccacagtttcaggggaaggtcaatacagtagagttt
ccattggagagtggatcagctgaaattaatttagtgctggctgaagacagtcctggaaga
gatagcactgaatatattcttgtctttgagccacacctgccagctttgaaaacacctttg
gaaccttattgtctctcatttatgttttacaatgattccaagaagcagcagctgatggca
acactgacaagggagaaagaccaattatctaagtctatagatctttacagaaagatgttt
gatactaccaaccagctcgtggctgaaatgaaatgtcaggttaaagaagctgaaacaaga
gaagctctcttgaggagcgaactgaagaagcaccaaattgaattaccaccgacaaacata
cttcagtatgtggattctcttcttaaaaaaaagatgtcggaacaagaaggagtaatgaag
cagccaaggagaacttgtaccctcccaaactatccaaaaggcaaccaggatattctaggc
aagattgcacatttagctcaaattgaggataacgaagcagcaaaagttatctcttggcac
ctggcaagtgacatggactgtgtggtcacactgaccacggaagccgctcgttctatcttt
gatgaaactcaaggtcgacaacaagtgttaccccttgattctatttacaagaagacactc
ccagattggagcagacctttacctcacttaagaaatggaagaaccttcttcagacctgtt
ggaaatccagtgtttgccagagatctgttaacatttccagataacatagagcattgtcaa
acagtgtttggtatgctcttgggtgacactatcattatagataacttggatgctgccaac
cactacagaaaagaggttgtgaaaattacacactgccctaccttgctgactagggaagga
gacaggattcgcagcaatggaaaatttggaggcctgcagaataaagctcctccaatggac
aaactcagaggaatggtatttggagcaccaatgccaaaactttactctactttttctgga
cagatagatcttcttcagcaataccgtgcagcagtggttaaacttgataatgtgaataag
gaccttgacttacatttgcagtcactgaacactccagaaatgcaaaagaaaaaacaggaa
cttgctgaacaagagaaaagcctcaagctagtaaaacaaaaattgggtatgactcctgct
ttatcagataaaggtgctgaatcattacttcaacctataatgttagatatatctgacacc
cccattcctcccaaaagaatgcgaagagagacagtgaaaaaattgtatagctcagaagaa
tggatctcttctggaaagcagcagcagcagccagtgctacaaatgaccccttcagaactt
aatggaactccacgaaaaagaaaggcatag
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integrated database retrieval system
