KEGG   Corvus brachyrhynchos (American crow): 103620910
Entry
103620910         CDS       T08418                                 
Symbol
TRAF6
Name
(RefSeq) TNF receptor-associated factor 6
  KO
K03175  TNF receptor-associated factor 6 [EC:2.3.2.27]
Organism
cbrc  Corvus brachyrhynchos (American crow)
Pathway
cbrc04010  MAPK signaling pathway
cbrc04120  Ubiquitin mediated proteolysis
cbrc04140  Autophagy - animal
cbrc04144  Endocytosis
cbrc04620  Toll-like receptor signaling pathway
cbrc04621  NOD-like receptor signaling pathway
cbrc04622  RIG-I-like receptor signaling pathway
cbrc05132  Salmonella infection
cbrc05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:cbrc00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    103620910 (TRAF6)
 09130 Environmental Information Processing
  09132 Signal transduction
   04010 MAPK signaling pathway
    103620910 (TRAF6)
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    103620910 (TRAF6)
   04140 Autophagy - animal
    103620910 (TRAF6)
 09150 Organismal Systems
  09151 Immune system
   04620 Toll-like receptor signaling pathway
    103620910 (TRAF6)
   04621 NOD-like receptor signaling pathway
    103620910 (TRAF6)
   04622 RIG-I-like receptor signaling pathway
    103620910 (TRAF6)
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    103620910 (TRAF6)
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    103620910 (TRAF6)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:cbrc04131]
    103620910 (TRAF6)
   04121 Ubiquitin system [BR:cbrc04121]
    103620910 (TRAF6)
Enzymes [BR:cbrc01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     103620910 (TRAF6)
Membrane trafficking [BR:cbrc04131]
 Endocytosis
  Clathrin-mediated endocytosis
   Ubiquitin E3 ligases
    103620910 (TRAF6)
Ubiquitin system [BR:cbrc04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   TRAF proteins
    103620910 (TRAF6)
SSDB
Motif
Pfam: TRAF-mep_MATH MATH_2 zf-TRAF TRAF6_Z2 zf-C3HC4_2 zf-C3HC4 zf-RING_UBOX zf-RING_2 zf-C3HC4_3 zf-TRAF_2 zf-C3HC4_4 zf-RING_5 Sina_ZnF SlyX PspA_IM30 Med21 TRAF3_RING RING_XB3-XBAT31 zf-RING_11 DUF16 DUF4455 CENP-F_leu_zip HAP1_N U-box CEP104_ZnF Spc29 ATG16 Myosin_tail_1 UPF0242 DUF1664 HMMR_N PUMA_CC DM ADIP zf_UBZ
Other DBs
NCBI-GeneID: 103620910
NCBI-ProteinID: XP_017597093
LinkDB
Position
Unknown
AA seq 526 aa
MSLLHSDSSCGARDGDSGWGTSAGNPPSSFSEETQGYDVEFDPPLESKYECPICLMALRE
AVQTPCGHRFCKGCIVKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLTVKCPNKGC
SMKMELRHLEDHQLQCDFSTVECPQCQGTFPKNHLKEHMTQECPRRQVCCPNCATSMAYE
DKELHDQTCPLANVFCEYCNTVLIREQMPNHYDNDCPTAPVPCFYSAFGCPEKMQRNELA
RHMQEFTQVHMRMMAQSFQNISVTAANPVPFINGLPFEPALFSHVSHAAYDCNPEVENFK
ETIQQLEGRLVRQDHQIRELIAKMETQNTHMAELKRTIRSLEGKITEMEAQQCNGIYIWK
IENFSGLQKAQEEERPVVMHSPGFYTGKPGYKLCLRLHIQLPNAQRCANFISLFVHTMQG
EYDSHLPWPFQGTIRLSILDQSEGPERQNHEEVMEAKPELLAFQRPTIHRNPKGFGYVTF
MHLQNLKQRTFIKDDTLLVRCEVLTRLDLNSVRREGFQARSTDGAM
NT seq 1581 nt   +upstreamnt  +downstreamnt
atgagcttgctgcacagtgacagcagctgtggagcccgagacggggacagcggctggggc
accagcgctggcaacccgcccagctctttctcagaggagacacaaggatacgacgtggag
ttcgatccgcccctggaaagtaaatatgagtgtcccatctgtctgatggctctccgggaa
gcagtgcagaccccgtgtggccaccgtttctgcaaaggctgcattgtcaaatcaatcaga
gatgcaggtcacaaatgtcctgtagacaatgaaattctgcttgaaaatcaactttttcct
gacaacttcgccaaacgggaaatcctttcattaacggttaagtgtcccaacaagggctgc
agtatgaagatggagctcaggcacttagaggaccaccagctgcagtgtgatttttccact
gtggaatgcccacagtgccaaggaaccttcccaaagaaccatctgaaggagcacatgacc
caggagtgtccaaggcgccaagtgtgttgcccaaactgtgccacatctatggcctatgaa
gataaagagcttcatgaccaaacctgcccacttgccaatgtattttgtgaatattgcaac
acagtgctcatcagagagcagatgcctaaccattatgacaatgattgtcctactgccccg
gtaccatgtttttacagtgcctttgggtgtcctgaaaagatgcaaaggaatgaactggca
cgacatatgcaggagttcactcaggttcacatgagaatgatggctcagagtttccagaac
attagtgtcactgctgcaaatcctgtacccttcatcaatggcctacccttcgagcctgcc
ctcttctcacatgtgtcacatgctgcatatgactgcaatccagaagttgaaaacttcaag
gaaactattcagcagttggaaggtcgtctggtaagacaagatcaccaaatcagggaactc
attgctaaaatggagactcagaacactcacatggcagaactcaaacgtactatccgaagc
ttggagggaaagattactgaaatggaggcacagcaatgtaatggtatttatatctggaag
attgagaacttcagtggactgcagaaagcccaggaagaagagagacctgtagtgatgcac
agtcctggcttctatacggggaagcctggctacaagctgtgcttgcgcctgcatatccag
ttaccaaatgctcagcgctgcgctaattttatctctctgttcgtccacactatgcaaggg
gaatatgacagccacctgccctggcctttccaaggcaccatacgactttctattttggat
caatcagaagggccggaaaggcagaaccatgaagaggtgatggaagccaagccagagcta
ctggctttccagagaccgacaattcaccgcaatcccaaaggttttggttatgtgactttc
atgcacctgcagaacttgaaacagagaaccttcatcaaggatgacacgctcctggtgcgc
tgcgaggttctaacgcgcctggacttgaacagtgtccgcagagaaggcttccaggcccgc
agtactgatggagccatgtag

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