Culicoides brevitarsis: 134833813
Help
Entry
134833813 CDS
T10947
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
cbri Culicoides brevitarsis
Pathway
cbri03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cbri00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
134833813
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cbri03041
]
134833813
Spliceosome [BR:
cbri03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
134833813
Complex C
U5 SnRNP specific factors
134833813
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
MMR_HSR1
Dynamin_N
Roc
Ras
Motif
Other DBs
NCBI-GeneID:
134833813
NCBI-ProteinID:
XP_063704338
LinkDB
All DBs
Position
3:complement(1258770..1262808)
Genome browser
AA seq
975 aa
AA seq
DB search
MDGDLYDEFGNYIGPELDSSDEDDDQSVYGQNEPVDDIDDDMPEDEEMEPDEDKTSRAVV
LHEDKRYYPTSLEVYGPDVETIVQEEDAQPLEKPLIEPVKRLKFQLKEQELPETTYNMEF
LADLMDTPPLIRNVALVGHLHHGKTTFADCLIRQTHPQFQTMEEKSLRYTDTLFTEQERG
VSIKSQPITLVLPDCKSKSYLMNIFDTPGHVNFSDEVTASIRLCDGVVLFVDAAEGIMLN
TERILKHAIQERLPITLCINKIDRLILELKLPPQDAYFKIKHVVEEVNALLALQAVNGQT
YQVSPALGNVCFASGLYGICFTLKSFAKLYADTYEGVNYVEFAKRLWGDMYFHAKSRKFT
KKPPHNSAQRSFIEFILEPLYKLFAQIVGDVDGTLIDTLNELAIRVNKEEMKCNIRPLMR
LICNRFMGDFSGFVDMCVEHISSPLENSKEKIDHIYTGPKEGSIYEDMLNCNQDGTLMVH
STKMYPSEDCTLFHVLARVMSGTIHAGQEVKVLGENYSLLDEEDSRILQIGRLWIYEARY
KIELNRVPAGNWVLIEGIDQSIVKTSTITEVNVVEDLYIFRPLKFNTQSIIKIAVEPVNP
SELPKMLDGLRKVNKSYPLLATRVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVAD
PVVAFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENETVSIGWNKKKLGEF
FQVNYDWDLLAARSIWAFGPDNTGPNILVDDTLPSEVDKSLLGSVKDSIVQGFQWGTREG
PLCEEPIRNVKFKILDAVIANEPLHRGGGQVIPTARRVAYSAFLMATPRLMEPYLFVEVQ
APADCVSAVYTVLAKRRGHVTQDAPVPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFC
LSVFHHYQIVPGDPLDKTIIIRPLEPQPATHLAREFMVKTRRRKGLSEDVSINKFFDDPM
LLELARQDVLLNSAF
NT seq
2928 nt
NT seq
+upstream
nt +downstream
nt
atggatggcgatttgtacgatgaattcggaaattatattggacctgagctcgacagtagc
gatgaggacgatgatcaaagcgtttatgggcaaaatgagcccgtcgacgatattgatgat
gacatgcccgaagatgaagaaatggaaccggatgaagacaaaaccagtcgtgccgttgtt
ttacacgaagacaaacgctactacccaacgtctctcgaagtttacggacccgatgtcgaa
accatcgttcaagaagaagatgcccaacccctcgaaaaaccccttatcgaacccgtaaaa
cgtttaaaattccaactgaaagaacaagaactccccgaaacgacttacaacatggaattt
ttagctgatttaatggatacgccgcctctcatccgcaacgttgctcttgtcgggcatttg
catcacggaaaaacgaccttcgctgattgcctaattcgtcaaacacatccgcaatttcaa
acgatggaagaaaaaagtttgcgatacaccgacacacttttcacggaacaagaacgcggc
gtttcaattaaatcgcaaccgataactctcgttttaccggattgcaaatcgaagagttat
ttaatgaatattttcgacactccgggacacgttaatttctccgacgaggtaactgcttcg
attcgattgtgcgatggcgtggttttgttcgttgatgcagccgaaggaattatgctcaac
acggagcgaattctaaaacatgcgattcaagaaagacttcccatcacgttgtgcatcaac
aaaatcgatcgattgattttagagttgaaattaccgccgcaagacgcttatttcaaaatt
aaacatgtcgttgaagaagtcaatgctttgttagctctccaagctgtcaacggacaaacg
tatcaagtatcgcctgctttgggaaatgtttgtttcgcaagcggattatacggaatttgc
ttcacgttgaaatcttttgcgaaattatacgctgacacctatgagggcgtcaattatgtc
gaattcgccaaaagactatggggtgacatgtatttccatgccaaatctcgtaaatttacg
aaaaaacctccccataattcggcgcaacgaagttttattgaattcattcttgaaccttta
tacaaacttttcgcccaaatcgttggagatgtcgacggcacgctcatcgatacattgaac
gaactcgcaattcgtgtcaacaaagaagaaatgaaatgtaatattcgacctctgatgcgt
ttaatatgtaatcgtttcatgggcgattttagcggcttcgttgacatgtgtgtcgaacat
atttcatctccattggaaaattcaaaggaaaaaatcgatcatatctatacgggacccaaa
gagggatccatttacgaggatatgttgaattgcaatcaagatggcactttaatggttcat
tcaacgaagatgtatccgtcggaagattgcactttgtttcatgttttggctcgtgtcatg
agcggaacaatccacgccgggcaagaagtcaaagttttgggcgaaaattactccctgctt
gacgaagaagactcccgaatcttgcaaattgggcgtttatggatctacgaagcacgttac
aagatcgagctgaatagagttcctgctggaaattgggttttgattgaaggaatcgaccag
agtatcgtaaaaacgtcgacaataacggaagttaatgttgtcgaggacttgtacatcttc
agaccattgaagtttaatacacaaagtatcatcaaaatcgccgttgaacctgtaaatccc
tcagaattgcccaaaatgttggatggattgagaaaagttaataaatcttaccctctgttg
gcgactcgggtcgaagaatctggcgaacatgtcattttagggacaggagaactgtatttg
gattgtgtgatgcacgatttacgcaagatgtactccgaaattgacatcaaagtagcagat
ccggtagttgctttttgcgaaactgtcgttgaaacgtcgtccttgaagtgtttcgctgaa
actccaaataaaaaaaataaaattacgatgattgcggagccgttggagaagggtttagct
gaagatattgagaatgaaacagtttccattggatggaataagaaaaaattgggagaattt
ttccaagttaactacgattgggatttgcttgcggcacgttcgatttgggcatttggtccg
gataatacaggtccgaatattttagttgacgatacgttaccttcggaagttgataagtca
cttttgggttcggtcaaagattcaattgttcaaggatttcaatggggaacgagagaaggc
ccgttatgcgaagaaccaattagaaatgtgaaatttaagattttagacgcagttattgcg
aatgaaccattgcatcggggaggaggacaagttattcccacagcacgtagagttgcgtat
tcggcatttttgatggcgacaccccgattgatggaaccctatttgttcgttgaagtgcag
gcgcccgcagattgtgtctctgctgtttatacagttcttgcgaaacgacgaggtcatgtt
acacaagatgctcctgtacccggatctccattgtacacgataaaagcattcattcccgcg
atcgattctttcggattcgaaacagatttgcgaactcacacgcaaggacaggcattttgt
ttgagtgttttccatcattatcagatcgtgccgggagatccgcttgacaaaacgattata
attagaccgttggagcctcaaccagcgacgcatttggcgcgtgaatttatggtcaaaaca
cgcagaaggaagggcttgagcgaagatgtgtcgattaacaaattcttcgatgatcctatg
ttgcttgaacttgcgagacaagatgttttactcaatagtgcgttctaa
DBGET
integrated database retrieval system
