Coxiella burnetii RSA 331: COXBURSA331_A0655
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Entry
COXBURSA331_A0655 CDS
T00632
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cbs
Coxiella burnetii RSA 331
Pathway
cbs03030
DNA replication
cbs03410
Base excision repair
cbs03420
Nucleotide excision repair
cbs03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cbs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
COXBURSA331_A0655 (ligA)
03410 Base excision repair
COXBURSA331_A0655 (ligA)
03420 Nucleotide excision repair
COXBURSA331_A0655 (ligA)
03430 Mismatch repair
COXBURSA331_A0655 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cbs03032
]
COXBURSA331_A0655 (ligA)
03400 DNA repair and recombination proteins [BR:
cbs03400
]
COXBURSA331_A0655 (ligA)
Enzymes [BR:
cbs01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
COXBURSA331_A0655 (ligA)
DNA replication proteins [BR:
cbs03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
COXBURSA331_A0655 (ligA)
DNA repair and recombination proteins [BR:
cbs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
COXBURSA331_A0655 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
COXBURSA331_A0655 (ligA)
MMR (mismatch excision repair)
DNA ligase
COXBURSA331_A0655 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
COXBURSA331_A0655 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
HHH
5_3_exonuc
Zn_ribbon_PF0610
RNA_ligase
BRCT_2
Tsp45I
DUF4874
Motif
Other DBs
NCBI-ProteinID:
ABX79044
UniProt:
A9NC33
LinkDB
All DBs
Position
566697..568709
Genome browser
AA seq
670 aa
AA seq
DB search
MEVPAKIQKRIERLRHEINDHNYRYYVLSQPTIPDSVYDELFHELEKLEKKYPETITPSS
PTQRVGAEPLKVFEPVHHEIPMLSLDNVFDEKGLRAFDKRIRQRLKLDKPFEYVCEPKMD
GVALSLLYENGELIRAATRGDGYTGENVTQNTRTIASVPLQLRGNDYPELVEIRGEVLMP
REGFAKFNREAEKRGDKTFANPRNAASGSLRQLDPRITAKRPLIFYGYLIGLLKGKDFPK
NHCDVLKWFKDWGIPVISEIKVVGGIEGCLDYYEHLVKTREKMPFDIDGIVIKVNSLQVQ
AELGFVSRAPRWAIAYKFPAQEKMTVVKAIEFQVGRTGAVTPVARLEPVSVSGVTVSNAT
LHNFDELYRKDVRVGDTVIVRRAGDVIPEVVGPILAKRPKKAKLIKIPSRCPVCHAEVIK
PEGEAVARCVGGLYCRAQLRESIKHFSSRRALDIEGLGDKLVELFIQEKLIKDITGIYQL
KKSAITALPRMGEKSAENLLTAIEKSKKTTLPRFLYALGIRGVGDTTARTLARHFHELDL
LMKASIETLQEIRDIGPVAAENIHAFFHQKNNAELINKLIHLGVHWPQEKAVVKSEIAGK
TFVLTGALKSLTREEAEEKIERSGGKATSSVSKNTDYVIVGENPGSKYEKAKALGISLID
EEAFLKLLKS
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
gtggaagttcctgcaaaaattcaaaagcggatcgagcggttgcgccatgaaattaatgat
cataattatcgttattacgtattatcacagcccactattcccgactccgtttatgatgaa
ctttttcatgagttagaaaagttagagaaaaaataccctgaaacaatcacgccttcgtct
cctacgcaacgcgtaggtgctgagccattaaaagtgtttgaacccgttcatcatgaaatt
ccgatgttatcgctggataacgtgtttgatgaaaaagggttgcgggcttttgataaacgc
attcggcagcgattgaaactcgataaacccttcgaatatgtgtgtgaaccaaagatggat
ggtgtcgccctcagtttactttacgaaaatggcgaattaattcgggccgccacgcgggga
gatggatataccggcgaaaacgtgactcaaaatacgcgaacgattgcatcggttccctta
caattgcgtggaaacgattatcctgaattagtggaaatacgtggcgaagtgctaatgccg
cgagagggttttgcaaaatttaatcgggaggctgaaaaacgtggcgacaaaaccttcgcc
aatccgcgtaacgcagcatccggtagtttgcgtcagctggacccgcggattacagccaaa
cgcccccttattttttacggttatttaatcggtttacttaaaggaaaagactttccgaaa
aatcattgtgacgtattgaagtggtttaaggattgggggattccagttatttctgaaata
aaagttgtaggtggcatagagggttgtcttgattattacgaacatttagtaaaaactcgt
gaaaaaatgccttttgatatcgatggaatcgttataaaagtaaattctctgcaagttcag
gctgaattaggattcgtttcgcgggcgccacgatgggctatcgcctataaatttccagcc
caggaaaaaatgacggtagtgaaagccatcgagtttcaagtaggacgcacgggcgctgtt
accccagtggctcgtttagaaccggtgtcggtaagtggagtgacggtcagtaatgcgact
ttgcacaatttcgacgaactttatcgtaaagacgtccgcgttggggatacggttattgtg
cgtcgagcgggtgatgtaattcccgaagtggtaggaccgattttagcaaagcgccccaaa
aaggcaaaactcataaaaataccgtctcgctgtcctgtttgccacgcggaagtcattaaa
ccggagggtgaagcagtagcgcgctgcgtggggggattatattgccgggctcaattgcgt
gagagtataaagcatttttcttcccgtcgggcgttggatattgaggggttaggagataaa
ttggtagagcttttcattcaggaaaaattaattaaagacattacgggaatttatcaactt
aaaaaatcagcaattacagctttgccgcgtatgggggaaaaatcggcagaaaatttatta
acagcaattgagaaaagtaaaaaaacaaccttgccgcgttttttgtatgcactgggaatt
cgcggcgttggtgatactaccgctcgaacgctagcgcgtcattttcacgaacttgacctt
ttaatgaaagcatcaattgaaaccttacaggaaattcgcgatatcggccccgtagcggca
gaaaatattcatgcttttttccatcaaaaaaataatgcggaattaattaataaattaatt
catttaggcgtgcattggccgcaagagaaagcagtggtgaaatcggaaattgctggtaag
acattcgtacttaccggtgctttgaaatcattaactcgcgaggaagcggaagaaaaaatc
gaacgatcaggagggaaggcgaccagcagcgtatcgaagaatacggattatgtgatcgtg
ggtgaaaacccgggtagcaaatacgaaaaggcaaaagcattgggaatttcgcttattgat
gaagaagccttcttgaaattactgaaatcgtaa
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integrated database retrieval system
