Clostridium botulinum E3: CLH_0395
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Entry
CLH_0395 CDS
T00767
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cbt
Clostridium botulinum E3
Pathway
cbt03030
DNA replication
cbt03410
Base excision repair
cbt03420
Nucleotide excision repair
cbt03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cbt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CLH_0395 (ligA)
03410 Base excision repair
CLH_0395 (ligA)
03420 Nucleotide excision repair
CLH_0395 (ligA)
03430 Mismatch repair
CLH_0395 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cbt03032
]
CLH_0395 (ligA)
03400 DNA repair and recombination proteins [BR:
cbt03400
]
CLH_0395 (ligA)
Enzymes [BR:
cbt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CLH_0395 (ligA)
DNA replication proteins [BR:
cbt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CLH_0395 (ligA)
DNA repair and recombination proteins [BR:
cbt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CLH_0395 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CLH_0395 (ligA)
MMR (mismatch excision repair)
DNA ligase
CLH_0395 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CLH_0395 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
PTCB-BRCT
HHH
DNA_pol_lambd_f
5_3_exonuc
BRCT_2
DNA_ligase_ZBD
RNA_pol_A_CTD
Nlig-Ia
HHH_3
POLH-Rev1_HhH
Zn_ribbon_PADR1
IMS_HHH_1
DUF669
Motif
Other DBs
NCBI-ProteinID:
ACD51207
UniProt:
B2UZ23
LinkDB
All DBs
Position
413814..415817
Genome browser
AA seq
667 aa
AA seq
DB search
MVDKIERIKELVEILNKYSYDYYVLDNPSVSDKDYDKKYDELKLLEKETGVVLPYSPTLR
IGDIVLDGFNKYTHKGKLWSLDKAQSLDEIKDWHNRNIKFVNDMRAQGEDLPDLKYIATK
KFDGLTVNLTYNEEGMLEVSATRGNGEIGENVTAQVKTIKSIPLKLQENHDLFEVHGEAI
MTQEAFEKYNSSADSPLKNLRNGAAGALRNLNVKETARRDLSAFFYDVGYKEGYQFKTYL
EMMDFIKEKGLPVDDYLKVCVSIEDIKNEIDYIEKIRFDLNYDIDGLVIAIDDIRTRELL
GYTVKFPKWAIAYKFEAQEATTKLVDVEWNVGRSGRIGPTAILEPVELAGVTVKRATLNN
MDDIKRKGVRIGADVFIRRSNDVIPEIMGTLENTLENSEEIFPPTECPACGSHVVLNGAH
YFCENTLSCKPQLVKTIVHYASRDAMNIAGFSEKTAEQLFEKLNIKSISDLYKLKKEDLI
NLEKFGDKKAENLLNAVEGSKECKLYSFIYALGIPNVGVKTAKDIVNKFKSIDGLKNATF
EELVSVQDVGDIVAQDIIEFFKEEKVISTIDELLSLGVNPIFDEVKIVESIFKDKTVVAT
GTLQNYSRTEIKTKLESLGAKVSGSVSKKTDYVIAGESAGSKLTKAEELGVEVISEEEFE
KMLGRES
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atggtggataaaatagaaagaataaaagagcttgttgaaatattaaataaatattcatat
gattattatgttcttgataatccatctgtgagtgataaggattatgataaaaaatatgat
gaacttaaattattagagaaggaaacaggagttgtacttccgtactcacctactttaaga
ataggcgatattgttttagatggatttaataaatatacacacaagggtaaactttggagt
ttagataaagctcaaagtttagatgaaataaaagactggcataatagaaatataaagttt
gttaatgatatgagagctcaaggtgaggatttacctgatttaaaatatatagcaactaaa
aagtttgatgggttaacagttaatttaacttataatgaagaaggtatgcttgaagttagt
gcaacaagaggcaatggagaaataggtgagaatgttactgcacaagtaaaaactattaaa
tctataccactaaaacttcaagaaaatcatgacttatttgaagtacatggtgaagcaatt
atgacacaagaggcttttgaaaaatataattctagtgcagatagtccattaaaaaattta
agaaatggtgcagctggagcattaagaaatcttaatgtaaaggagactgcaagaagagac
ttatcagcatttttctatgatgttggatataaagaaggatatcaatttaaaacttattta
gaaatgatggattttataaaggaaaaaggattacctgttgatgattatttaaaggtatgt
gtatctattgaggatataaagaatgaaatagattatatagaaaaaataagatttgatcta
aattatgatattgatggattggtaattgctatagatgatattagaacaagagaattatta
ggttatacagttaaatttcctaaatgggcaatagcttataaatttgaagcacaagaggct
acaacaaaacttgtagatgttgaatggaatgttggaagaagtggaagaataggaccaaca
gcaatattagaacctgtggaattagcaggagtaactgttaaaagagcaacccttaataat
atggatgatataaaaagaaaaggggtaaggattggtgctgatgtatttattagaaggtct
aatgatgttataccagaaataatgggaacactagaaaatacattggaaaattctgaagaa
atatttccaccaactgaatgtccggcatgtggtagtcatgtagttttaaatggagcacat
tatttttgtgaaaacacactttcttgtaagccacaattggttaaaaccatagttcattat
gcttcaagggatgctatgaatatagcaggattttcagaaaaaacagcagaacaattattt
gaaaagttaaatattaaatctatatcagacttatataaattaaaaaaagaagatttaata
aacttggaaaaattcggagacaagaaagctgaaaatttattaaatgcagttgaaggtagc
aaagaatgtaaattatattcatttatatatgccttaggtattcctaatgtaggagtaaag
acagctaaggatattgtaaataagtttaaatcaatagatgggttgaaaaatgctacattt
gaagaattagtatcagttcaagatgttggtgatatagttgctcaagatataattgaattc
tttaaagaagaaaaagtaataagtactattgatgaattattaagtttaggagtaaatcct
atattcgatgaagttaaaatagtagaaagcatttttaaagataaaactgtagttgctact
ggtacattacaaaattattctagaactgaaataaaaactaagctagagagtttaggtgct
aaagtttcaggtagtgtaagtaaaaaaacagactatgtaatagctggagaatcagcagga
tcaaaattaactaaagcagaagaacttggagttgaagttatttctgaagaagaatttgaa
aaaatgttgggacgtgaaagttaa
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