Coxiella burnetii RSA 493: CBU_0542
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Entry
CBU_0542 CDS
T00124
Symbol
ligA
Name
(RefSeq) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cbu
Coxiella burnetii RSA 493
Pathway
cbu03030
DNA replication
cbu03410
Base excision repair
cbu03420
Nucleotide excision repair
cbu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cbu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CBU_0542 (ligA)
03410 Base excision repair
CBU_0542 (ligA)
03420 Nucleotide excision repair
CBU_0542 (ligA)
03430 Mismatch repair
CBU_0542 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cbu03032
]
CBU_0542 (ligA)
03400 DNA repair and recombination proteins [BR:
cbu03400
]
CBU_0542 (ligA)
Enzymes [BR:
cbu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CBU_0542 (ligA)
DNA replication proteins [BR:
cbu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CBU_0542 (ligA)
DNA repair and recombination proteins [BR:
cbu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CBU_0542 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CBU_0542 (ligA)
MMR (mismatch excision repair)
DNA ligase
CBU_0542 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CBU_0542 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
HHH
5_3_exonuc
Zn_ribbon_PF0610
RNA_ligase
BRCT_2
Tsp45I
DUF4874
Motif
Other DBs
NCBI-GeneID:
1208427
NCBI-ProteinID:
NP_819574
UniProt:
Q83DZ6
LinkDB
All DBs
Position
487919..489940
Genome browser
AA seq
673 aa
AA seq
DB search
MNGVEVPAKIQKRIERLRQEINDHNYRYYVLSQPTIPDSVYDELFHELEKLEKKYPETIT
PSSPTQRVGAEPLKVFEPVHHEIPMLSLDNVFDEKGLRAFDKRIRQRLKLDKPFEYVCEP
KMDGVALSLLYENGELIRAATRGDGYTGENVTQNTRTIASVPLQLRGNDYPELVEIRGEV
LMPREGFAKFNREAEKRGDKTFANPRNAASGSLRQLDPRITAKRPLIFYGYLIGLLKGKD
FPKNHCDVLKWFKDWGIPVISEIKVVGGIEGCLDYYEHLVKTREKMPFDIDGIVIKVNSL
QVQAELGFVSRAPRWAIAYKFPAQEKMTVVKAIEFQVGRTGAVTPVARLEPVSVSGVTVS
NATLHNFDELYRKDVRVGDTVIVRRAGDVIPEVVGPILAKRPKKAKLIKIPSRCPVCHAE
VIKPEGEAVARCVGGLYCRAQLRESIKHFASRRALDIEGLGDKLVELFIQEKLIKDITGI
YQLKKSAITALPRMGEKSAENLLTAIEKSKKTTLPRFLYALGIRGVGDTTARTLARHFHE
LDLLMKASIETLQEIRDIGPVAAENIHAFFHQKNNAELINKLIHLGVHWPQEKAVVKSEI
AGKTFVLTGALKSLTREEAEEKIERSGGKATSSVSKNTDYVIVGENPGSKYEKAKALGIS
LIDEEAFLKLLKS
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
gtgaatggtgtggaagttcctgcaaaaattcaaaagcggatcgagcggttgcgccaggaa
attaatgatcataattatcgttattacgtattatcacagcccactattcccgactccgtt
tatgatgaactttttcatgagttagaaaagttagagaaaaaataccctgaaacaatcacg
ccttcgtctcctacgcaacgcgtaggtgctgagccattaaaagtgtttgaacccgttcat
catgaaattccgatgttatcgctggataacgtgtttgatgaaaaagggttgcgggctttt
gataaacgcattcggcagcgattgaaactcgataaacccttcgaatatgtgtgtgaacca
aagatggatggtgtcgccctcagtttactttacgaaaatggcgaattaattcgggccgcc
acgcggggagatggatataccggcgaaaacgtgactcaaaatacgcgaacgattgcatcg
gttcccttacaattgcgtggaaacgattatcctgaattagtggaaatacgtggcgaagtg
ctaatgccgcgagagggttttgcaaaatttaatcgggaggctgaaaaacgtggcgacaaa
accttcgccaatccgcgtaacgcagcatccggtagtttgcgtcagctggacccgcggatt
acagccaaacgcccccttattttttacggttatttaatcggtttacttaaaggaaaagac
tttccgaaaaatcattgtgacgtattgaagtggtttaaggattgggggattccagttatt
tctgaaataaaagttgtaggtggcatagagggttgtcttgattattacgaacatttagta
aaaactcgtgaaaaaatgccttttgatatcgatggaatcgttataaaagtaaattctctg
caagttcaggctgaattaggattcgtttcgcgggcgccacgatgggctatcgcctataaa
tttccagcccaggaaaaaatgacggtagtgaaagccatcgagtttcaagtaggacgcacg
ggcgctgttaccccagtggctcgtttagaaccggtgtcggtaagtggagtgacggtcagt
aatgcgactttgcacaatttcgacgaactttatcgtaaagacgtccgcgttggggatacg
gttattgtgcgtcgagcgggtgatgtaattcccgaagtggtaggaccgattttagcaaag
cgccccaaaaaggcaaaactcataaaaataccgtctcgctgtcctgtttgccacgcggaa
gtcattaaaccggagggtgaagcagtagcgcgctgcgtggggggattatattgccgggct
caattgcgtgagagtataaagcattttgcttcccgtcgggcgttggatattgaggggtta
ggagataaattggtagagcttttcattcaggaaaaattaattaaagacattacgggaatt
tatcaacttaaaaaatcagcaattacagctttgccgcgtatgggggaaaaatcggcagaa
aatttattaacagcaattgagaaaagtaaaaaaacaaccttgccgcgttttttgtatgca
ctgggaattcgcggcgttggtgatactaccgctcgaacgctagcgcgtcattttcacgaa
cttgaccttttaatgaaagcatcaattgaaaccttacaggaaattcgcgatatcggcccc
gtagcggcagaaaatattcatgcttttttccatcaaaaaaataatgcggaattaattaat
aaattaattcatttaggcgtgcattggccgcaagagaaagcagtggtgaaatcggaaatt
gctggtaagacattcgtacttaccggtgctttgaaatcattaactcgcgaggaagcggaa
gaaaaaatcgaacgatcaggagggaaggcgaccagcagcgtatcgaagaatacggattat
gtgatcgtgggtgaaaacccgggtagcaaatacgaaaaggcaaaagcattgggaatttcg
cttattgatgaagaagccttcttgaaattactgaaatcgtaa
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