Clostridium butyricum: ATN24_03275
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Entry
ATN24_03275 CDS
T04197
Name
(GenBank) aromatic ring-opening dioxygenase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cbut
Clostridium butyricum
Pathway
cbut03030
DNA replication
cbut03410
Base excision repair
cbut03420
Nucleotide excision repair
cbut03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cbut00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ATN24_03275
03410 Base excision repair
ATN24_03275
03420 Nucleotide excision repair
ATN24_03275
03430 Mismatch repair
ATN24_03275
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cbut03032
]
ATN24_03275
03400 DNA repair and recombination proteins [BR:
cbut03400
]
ATN24_03275
Enzymes [BR:
cbut01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ATN24_03275
DNA replication proteins [BR:
cbut03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ATN24_03275
DNA repair and recombination proteins [BR:
cbut03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ATN24_03275
NER (nucleotide excision repair)
GGR (global genome repair) factors
ATN24_03275
MMR (mismatch excision repair)
DNA ligase
ATN24_03275
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ATN24_03275
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
HHH
PTCB-BRCT
Nlig-Ia
DNA_pol_lambd_f
5_3_exonuc
BRCT_2
DNA_ligase_ZBD
RNA_pol_A_CTD
POLH-Rev1_HhH
IMS_HHH_1
Zn_ribbon_PADR1
Motif
Other DBs
NCBI-ProteinID:
ALP89215
LinkDB
All DBs
Position
1:712481..714472
Genome browser
AA seq
663 aa
AA seq
DB search
MDKKEKIKELVEQLNNYSYKYYVLDDPSVTDKEYDKIYDELKKLEEETGFVLPYSPTLRV
GDIVLDGFEKYTHKAKLWSLDKAQSIEEIIDWHNRNVKFVNDMRLKGEDLPDLKYVLTKK
FDGLTINLTYNEEGVMEIAATRGTGNIGENVTAQVKTIKSIPLKIENNDILEVHGEAVMT
QEAFDKYNESAQVPLKNLRNGAAGALRNLNVKETARRNLSAFFYDIGYKEGSPFKTYLEM
LNFIKEKGLPMDDYMKVCTTIDEIQEQIDYINSIRFDLNYDIDGLVVAIDDMRTRELMGY
TVKFPKWAIAYKFEAQEATTKLLGVEWNVGRSGRLAPTAILEPVELAGVTVKRATLNNMD
DIARKGVKIGADVFVRRSNDVIPEIMGIVPETLDGAEDIKPPTECPACGSHIILDGAHYF
CENTLSCKPQMVKSIVHYACREAMNIAGFSERTAEQLFEKLNIKSISDLYKLKEEELIDL
EKFGPKKAQNLLKAIENSKECELHAFIYALGIPNVGVKTAKDLVSRFKSIEGLKNATFEE
LVSVPDVGDIVAQDVMSFFKEEKVLETIDELLELGVNPKFEEVEVTENPFMGKTVVATGS
LQNYSRSEIKEKLESLGAKVAGSVSKKTDYVIAGEAAGSKLTKAQELGVKVLSEEEFEEI
LRG
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
gtggataagaaggaaaaaataaaagaattagttgaacagttaaacaattattcctataaa
tattatgttttagatgatccaagtgtaacagataaagaatatgataaaatatatgatgaa
ctaaaaaaattagaagaggaaacaggatttgtacttccttattcaccaactttaagagtt
ggtgatattgttcttgatggatttgaaaaatatactcataaggcaaagctttggagtctt
gataaggctcaatctattgaggaaattatagattggcacaacagaaatgttaagtttgtg
aatgatatgagattaaaaggtgaagatttgccagatttaaagtatgttctcacaaagaaa
tttgatggacttacaataaacttaacatataatgaagaaggagtaatggaaattgctgca
acaagaggaactggaaatattggtgaaaatgtaactgctcaggttaaaacaattaaatca
atacctctaaagattgaaaataatgatattcttgaagttcatggtgaagcagtgatgact
caggaagcattcgataaatataatgaaagtgcacaagttcctcttaaaaatttaagaaat
ggtgcagcaggagcacttagaaatcttaatgtaaaggaaactgcaagaagaaacctttct
gcatttttttatgacattggttataaagaaggatctccttttaaaacatatttagaaatg
ctaaatttcataaaagaaaaaggtcttcctatggatgactatatgaaagtttgtactaca
attgatgagatacaagaacaaattgattatataaatagtataagatttgatttaaattat
gatatagacgggcttgtagttgcaattgatgatatgagaacaagagaacttatgggatat
acagtaaaattccctaaatgggcaattgcttataagtttgaagctcaggaagctactaca
aaacttcttggtgttgaatggaatgttggtagaagtggtagacttgcaccgacagctata
ttagaacctgtagaacttgcaggagttacagttaaaagagccactttgaataatatggat
gatatcgcaagaaaaggtgttaaaataggggcagatgtatttgttcgtagaagtaatgat
gttatacctgaaataatgggaatagtacctgaaacattagatggtgcagaggatattaaa
ccacctacagaatgtccggcatgtggaagccacattatactagatggagcacattatttc
tgtgaaaacacattatcatgtaaaccacagatggttaagagtatagttcattatgcatgt
agagaagctatgaatattgcaggtttctctgaaagaacagctgaacagttatttgaaaag
cttaatattaaatcaatttctgatttgtataaattaaaagaagaagaacttattgatctt
gaaaaatttggaccaaagaaggcacagaatcttttaaaagccattgaaaatagtaaggaa
tgtgaacttcatgcctttatatatgcactgggtattccaaatgtaggtgttaaaactgct
aaggacttagtaagtagattcaaatctatagaaggattaaagaatgctacatttgaagaa
ttagttagtgttcctgatgttggggatattgttgctcaagatgttatgtcattctttaaa
gaagaaaaagttcttgaaactatagatgaattattagagcttggagttaatcctaagttt
gaagaggttgaagtaactgaaaatccatttatgggaaaaacagtagtagcaacaggttca
cttcagaattattcaagatcagaaataaaagaaaagttagaaagtcttggggcaaaggtt
gcaggaagtgtaagtaaaaagactgattatgtaattgcaggcgaagcagcaggttctaaa
cttacaaaagcacaggaacttggtgttaaagtactttcagaagaggagtttgaagaaata
ttaagggggtaa
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