KEGG   Cupriavidus basilensis: RR42_m2409
Entry
RR42_m2409        CDS       T03642                                 
Name
(GenBank) DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
cbw  Cupriavidus basilensis
Pathway
cbw03030  DNA replication
cbw03410  Base excision repair
cbw03420  Nucleotide excision repair
cbw03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cbw00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    RR42_m2409
   03410 Base excision repair
    RR42_m2409
   03420 Nucleotide excision repair
    RR42_m2409
   03430 Mismatch repair
    RR42_m2409
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cbw03032]
    RR42_m2409
   03400 DNA repair and recombination proteins [BR:cbw03400]
    RR42_m2409
Enzymes [BR:cbw01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     RR42_m2409
DNA replication proteins [BR:cbw03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     RR42_m2409
DNA repair and recombination proteins [BR:cbw03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     RR42_m2409
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     RR42_m2409
   MMR (mismatch excision repair)
    DNA ligase
     RR42_m2409
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      RR42_m2409
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD Nlig-Ia PTCB-BRCT HHH BRCT_2 5_3_exonuc
Other DBs
NCBI-ProteinID: AJG19801
UniProt: A0A0C4YGJ1
LinkDB
Position
main:complement(2547413..2549539)
AA seq 708 aa
MSTKPEGAAAQATAPVSDSPAARADWLRAELERHNYQYYVLDAPSVPDAEYDVLFRELQD
IETRHPELLTPESPTQRVGGQPLSAFDTVRHAIPMLSLNNGFEDEDVLAFDRRCAQGLGR
AAPADGTADLFSAAEAVEYACELKFDGLAMSLRYEAGRLVQAATRGDGETGEDVTVNVRT
IKAIPLRLRGEAEALPAVLEVRGEVFMYRREFDKLNARQAEAGEKTFVNPRNAAAGSLRQ
LDPRITAKRPLSFFAYGLGELQGAPRPETHSAMLDWFAGLGMPVCAEREVVRGADGLLSF
YRGVGERRAALPYDIDGVVYKVNALAEQERLGFVSRAPRFALAHKFPAQEMTTVVEDIEV
QVGRTGAITPVARLAPVFVGGVTVTNATLHNEDEIRRKDVHIGDTVIVRRAGDVIPEVVA
VVPERRPADARAFVMPTACPVCGSHIEKLEGEVIARCTGGLICAAQRKQALLHFAQRRAM
DIEGLGDKVVEQLVDMAIVHTPADLYKLGVAKLAALDRMADKSATNLVAAIEASRETTLN
RFIFSLGIRHVGEATAKDLAKHFGKLDGLLAADEAALLEVNDVGPVVAQSIANFLAEPHN
VEVIEQLRAAGVHWPESEPAQRAAPAPLAGKTFVLTGTLPTLSREDAKEMLEAAGAKVAG
SVSKKTDYVVAGAEAGSKLEKAEALGVPVLDEAALLALLAELNTGDQA
NT seq 2127 nt   +upstreamnt  +downstreamnt
atgagcaccaaaccagaaggcgcggcggcgcaagccaccgcgcctgtcagcgattctccc
gccgcgcgcgccgactggctgcgcgccgagctggagcgccacaattaccagtactacgtc
cttgatgcgccgtcggtgcccgatgccgagtacgacgtgctgttccgcgaattgcaggac
atcgagaccaggcatcccgagttgctgacccctgagtcgcccacgcagcgcgtgggcggc
cagccgctgtcggccttcgacacggtacgccatgccatcccgatgctgtcgctcaacaac
ggcttcgaggatgaggatgtgctggccttcgaccgtcgttgcgcgcaggggctggggcgt
gccgcccccgccgacggcacggccgacctgttcagcgccgccgaggcagtggagtacgcc
tgcgagctgaagttcgatggcctggccatgtccttgcgctacgaggccggtcggctggtg
caggccgccacccgcggcgacggcgagactggcgaggatgtgaccgtcaacgtgcgcacc
atcaaggcgattccgctgcgcttgcgcggcgaggccgaggccttgccagcggtgctggaa
gtgcgcggggaagtcttcatgtatcgccgcgaattcgacaagctcaatgcgcggcaggcc
gaggccggtgaaaagaccttcgtcaatccgcgcaacgccgccgccggcagcctgcgccag
ctggatccgcgcatcaccgccaagcgtccgttgtcgtttttcgcctacgggctgggcgag
ctgcaaggcgcgccgcgtcccgagacgcacagcgccatgctcgactggttcgccgggctt
ggcatgccggtctgcgcggagcgcgaagtcgtgcgaggtgcggacggcttgctgagcttc
tatcgcggggtgggcgagcggcgcgcggcgttgccgtacgacatcgacggcgtggtgtac
aaggtcaacgcgctggccgagcaggagcgccttggcttcgtgtcgcgtgcgccgcgcttc
gcgctggcgcacaagttcccggcccaggaaatgaccacggtggtcgaggatatcgaggtg
caggtcggccgcaccggcgccatcacgccggtggcgcggctggcgccggtgttcgttggc
ggcgtgacggtgaccaatgccacgctgcacaacgaggacgagatccgccgcaaggacgtg
catatcggcgataccgtgatcgtgcggcgcgccggcgacgtgattcccgaagtggtggcg
gtggtgccggagcgccggcccgccgacgcacgcgccttcgtcatgcccaccgcatgcccg
gtgtgcgggtctcacatcgagaagctggaaggcgaggtgatcgcgcgctgcaccggcggg
ctgatctgcgcggcccagcgcaagcaggcgctgctgcatttcgcgcagcgccgcgccatg
gatatcgaaggcctcggcgacaaggtggtcgagcaactggtcgacatggccatcgtgcac
acgccggccgatctctacaagcttggcgtcgccaagctggccgcgctggaccggatggcc
gacaagtcggccaccaacctggtggccgccatcgaggcgtcgcgcgagaccacgctcaac
cgctttatcttctcgctaggcatccgccatgtgggcgaagcgacggccaaggacctggcc
aagcatttcggcaagctcgatgggctgctggcagccgacgaggccgccttgctcgaggtc
aacgacgtggggccggtggtggcgcagtccatcgccaacttcctggccgagccgcacaac
gtggaagtcatcgagcaactgcgtgccgccggcgtgcactggccggaaagcgagccggcg
cagcgtgcggcgcccgcgccgctggccggcaagacgttcgtgctgacaggcacgctgccc
acgctgtcgcgcgaagacgccaaggaaatgctggaggcggccggcgccaaggtggccggc
tcggtgtcgaagaagactgactatgtggtggctggcgcggaagccggcagcaaactggaa
aaggccgaggcgctcggcgtgcccgtgctggacgaggccgccttgctggctttgctggcc
gagcttaataccggagatcaagcatga

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