Candidatus Symbiobacter mobilis: Cenrod_1005
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Entry
Cenrod_1005 CDS
T02877
Symbol
lig
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cbx
Candidatus Symbiobacter mobilis
Pathway
cbx03030
DNA replication
cbx03410
Base excision repair
cbx03420
Nucleotide excision repair
cbx03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cbx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Cenrod_1005 (lig)
03410 Base excision repair
Cenrod_1005 (lig)
03420 Nucleotide excision repair
Cenrod_1005 (lig)
03430 Mismatch repair
Cenrod_1005 (lig)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cbx03032
]
Cenrod_1005 (lig)
03400 DNA repair and recombination proteins [BR:
cbx03400
]
Cenrod_1005 (lig)
Enzymes [BR:
cbx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Cenrod_1005 (lig)
DNA replication proteins [BR:
cbx03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Cenrod_1005 (lig)
DNA repair and recombination proteins [BR:
cbx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Cenrod_1005 (lig)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cenrod_1005 (lig)
MMR (mismatch excision repair)
DNA ligase
Cenrod_1005 (lig)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Cenrod_1005 (lig)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
HHH
PTCB-BRCT
BRCT_2
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
AGX87104
UniProt:
U5NA90
LinkDB
All DBs
Position
complement(1079293..1081518)
Genome browser
AA seq
741 aa
AA seq
DB search
MENSHRFTYPTLLTPVVQRDDRTMGDTPDFAARIERLRAVLQDHAHRYYVLDDPIVPDAE
YDRLYAELAALETAHPQWVSPDSPTQRIGGKPLEGFGQVRHRVPMRSIRTETDTTPMGAA
QFDLRIRKELGLSDADPPVVYMVEPKFDGLAINLRYEHGVLVQAATRGDGEMGEDVTHTI
RTIRQIPLRLAVAPQPMAEGAEVQEVPEVLEVRGEVYLRRSVFRELNARAQQESAAGTHG
AKVFVNPRNAAAGAVRQLDPAIAASRRLSFFAYGVGEVSPVFWAGCTSQWELLQVLRGWG
FLVSTLVQRAHGHGELAARYQELGVLRDALDFDIDGVVYKVDALALQERLGYLTREPRWA
VAHKFPAQEQITTVQAIDVQVGRTGKLTPVARLAPVFVGGATVTNASLHNEDEVLRKDVR
VGDRVVVRRAGDVIPEVAYVVLDDPAEASCERGANPFRMPVLCPVCASHVVREDGEVDHR
CSGGLHCSAQRKQALAHWAQKRALDIDGLGDKLIDQLVDRDLVRTLPDVYRLDLDTLCGL
ERMAELSASNLRTAIEGSKRTTLARFLYGLGIRHVGESTAKALARHFGGLDAILRATVEQ
LQAVDDVGPTVARSVRAFFDEHHNLTVVQALRACGLTWEEGAPVQAQALPLQGKTVVVTG
TLPTLSREDAHARIEAAGGKASSSVSQRTHFVLAGENPGSKLAKAHSLGVRVIDEAEFLA
MLGMGAEQADESGTLMQKTLV
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
atggaaaactcacaccggtttacctaccctacgctcctgactcctgtcgtgcagagagac
gaccgcaccatgggcgataccccagacttcgcagcacggatcgagcgattgcgtgcggtg
ctgcaagaccatgcgcaccggtattacgtgttggacgaccccatcgtccccgacgctgaa
tacgaccggctctacgcggaattggcagcgttggaaacagcgcacccccagtgggtcagc
ccggattcccccacccagcgtatcggtggcaagccgctggaaggctttgggcaggtgcgg
catcgcgtgcccatgcgcagcatccgcaccgaaaccgacaccaccccgatgggtgcggcg
cagttcgatctccgtattcgcaaggaactgggcctgagcgatgccgacccgccagtggtc
tacatggtcgaacccaaattcgatggactggccatcaacctgcggtacgagcatggagtg
ctcgtacaagccgccacgcgcggagacggggagatgggggaagatgtcacgcacaccatt
cgcacgatccggcagattcccttgcggctggccgttgccccgcagcctatggcggagggg
gcggaagtgcaagaagtgccggaagtactcgaagtgcgtggcgaggtctacctgcggcgc
agcgtattccgcgaactcaatgcccgcgcgcagcaggaatccgctgcgggaacccacggc
gccaaggtgttcgtcaacccccgcaatgccgctgccggtgccgtgcgccagctcgacccc
gcgatcgctgcatcgcgccgattgagtttttttgcctatggggtaggcgaggtttccccc
gttttttgggcgggatgtaccagccagtgggaactgctgcaagtgctgcggggctggggg
ttcctggtatccacgttggtgcagcgtgcccatgggcatggcgagctggctgcgcgctac
caagagttgggtgtgctacgcgatgcgctcgacttcgacatcgacggcgtggtctacaag
gtcgatgcgctggcgttgcaagagcggctggggtacctgacccgcgaaccccgttgggcc
gtggcgcacaaattccctgcccaggagcagatcacgacagtgcaggccatcgacgtacag
gtggggcgcacaggcaagctcacccccgttgcgcgtttggcgccggtgttcgtcggcggt
gcgacagtcaccaatgccagcctgcacaacgaagacgaagtactgcgcaaggatgtgcgg
gtcggcgatcgcgtcgttgtgcgcagggcgggggacgttatccccgaagtggcttatgtc
gtccttgatgacccggcagaggcatcatgcgaacggggtgccaacccgttccgcatgccg
gtgctgtgccccgtgtgtgcctcgcacgtggtgcgcgaggacggggaagtcgatcaccgt
tgttccggcggcctgcattgcagcgcgcagcgcaagcaagcgctggcgcattgggcgcaa
aagcgtgcgctcgacatcgacgggctgggcgacaagctcatcgaccagctcgtggatcgg
gaccttgtgcgcaccttgccagacgtgtaccgcctcgatctggacaccctgtgcggactc
gaacgcatggcggaactctcggcatcgaatttgcgcacggccatcgaagggtcgaagcgg
acgaccttggcgcggtttttgtacggcctgggcattcgccatgtcggcgaatcgacggcc
aaagccttggctcggcacttcggcgggctggatgcgatattgcgtgccaccgtagagcag
ttgcaggctgttgacgacgtggggcctaccgtggcccggagcgtgcgagcgtttttcgac
gaacaccacaacctgaccgtagtgcaggcgctgcgggcgtgtgggctgacgtgggaagag
ggcgcgccggtgcaagcacaagccctgcctttgcagggaaagacagtcgtagtgacggga
acgctgcctaccctgagcagggaagacgcgcacgcccgcatcgaagccgcaggcggcaag
gcatcaagctcggtaagccagcgcacgcactttgtgttggctggggagaaccccggttcc
aagctcgccaaggcgcattcgctgggcgtccgggtgatcgacgaagccgaatttttggcg
atgctgggcatgggtgcggagcaggccgacgagtcgggaaccttgatgcaaaagacgttg
gtgtag
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integrated database retrieval system
