Clostridium cadaveris: KQH81_13950
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Entry
KQH81_13950 CDS
T07934
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ccaa
Clostridium cadaveris
Pathway
ccaa03030
DNA replication
ccaa03410
Base excision repair
ccaa03420
Nucleotide excision repair
ccaa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ccaa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KQH81_13950 (ligA)
03410 Base excision repair
KQH81_13950 (ligA)
03420 Nucleotide excision repair
KQH81_13950 (ligA)
03430 Mismatch repair
KQH81_13950 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ccaa03032
]
KQH81_13950 (ligA)
03400 DNA repair and recombination proteins [BR:
ccaa03400
]
KQH81_13950 (ligA)
Enzymes [BR:
ccaa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KQH81_13950 (ligA)
DNA replication proteins [BR:
ccaa03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KQH81_13950 (ligA)
DNA repair and recombination proteins [BR:
ccaa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KQH81_13950 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KQH81_13950 (ligA)
MMR (mismatch excision repair)
DNA ligase
KQH81_13950 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KQH81_13950 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
PTCB-BRCT
HHH
DNA_pol_lambd_f
BRCT_2
DNA_ligase_ZBD
5_3_exonuc
HHH_3
POLH-Rev1_HhH
Nlig-Ia
E2_bind
Zn_ribbon_PADR1
RNA_pol_A_CTD
DUF7501
Motif
Other DBs
NCBI-ProteinID:
UFH64370
LinkDB
All DBs
Position
complement(2898020..2900017)
Genome browser
AA seq
665 aa
AA seq
DB search
MAVDKRKRIEELIEELNRYSHEYYVLDNPSVSDKDYDIKYDELRKLEEETGIVLPYSPTV
RVGDGVLPQFKKYTHKARLWSLDKAQTLGELEDWHRKNLKAVEDYNKTAESPLPQISYVV
TKKFDGLTLNCTYDESGIFVKAATRGTGEVGEDITAQAKTIKSLPLKIDYDYQIEIHGEA
IMTREAFEAYNKSAEEPLKNLRNGAAGALRNLNLKETAKRNLTAFFYDVGYNEGTPFKTY
MEMMDFIKEKGFLMDDYLKQCSDMEEIEKEIKYIEHIRFDLNYDIDGVVIAINDMRTREL
LGYTVKFPKWAIAYKFEAQEAVTTLMDVEWNVGRSGRVSPTAILEPVELAGVTVKRATLN
NMDDIHRKGVRLGSKVFVRRSNDVIPEIMGVAEENTETTKEIIPPTHCPYCGSEIVLDGA
HYFCENTLSCKPQMVKSIVHFACREAMNIEGFSEKTAEQLFEKLDIKSLSDLYTLKKEEL
LTLEKFGEKKAQNLLNAIEKSKNCDLSSFVYSLGIPNVGVKTSKDLAKNFKSLDGIRNAK
VEDLVSIQDIGDIVAKSIVEFFKDERIQKSINDLLNLGVTPRFEETSVVENPFQGKTVVV
TGTLKNYSRGDIKAKFESLGAKVSSSVSKKTDYVLAGEEAGSKYNKAVELGVKILSEDEF
TEMIN
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atggctgtggataagagaaaaagaatagaggaattaatagaagagcttaatagatattct
catgaatattatgtattagataatccttcagtaagtgataaggattatgatataaaatat
gatgaattaagaaaattagaagaggaaacagggatagtgcttccttattcaccaacagtt
agagttggtgatggtgtacttcctcaatttaaaaaatatacacataaagctaggttatgg
agtttggataaagctcagacattaggagagcttgaagattggcatagaaaaaatttgaaa
gcagtagaggactataataaaacagcagaaagccctcttccacaaatatcttatgttgtt
acgaaaaagtttgatgggcttactttaaattgtacttatgatgaaagtgggatttttgta
aaagctgcgactagaggaacaggagaggttggagaggatattacagctcaagcaaagaca
ataaagtcacttcctctaaagatagactatgattatcaaatagagatacatggagaggct
ataatgactagagaagcttttgaagcatataataaaagtgcagaagagcctctaaagaat
cttagaaatggagcagcgggagctttaagaaacctaaatttaaaggaaactgcaaaaaga
aatcttacggcatttttctatgatgtaggatataatgagggaacaccatttaaaacttat
atggaaatgatggactttataaaagaaaaaggtttcttaatggatgactatttaaaacaa
tgctctgatatggaagaaattgaaaaagaaataaaatatatagagcatataagatttgat
ttaaattatgatatagatggtgtcgtaatagcaataaatgatatgaggactagagagctt
cttggatatactgtgaaatttcctaaatgggccatagcctataagtttgaagctcaagaa
gcagttacaactcttatggatgtagaatggaatgttggaagaagtggaagagtaagtcca
actgctatattagaaccggtggaattagcaggagttactgtaaaaagagccactttaaat
aacatggatgatattcatagaaaaggagttagactgggatcaaaggtatttgtaagaaga
tctaatgatgtaattcctgaaatcatgggagtagctgaggaaaatacagaaactactaaa
gagataatacctccaactcattgcccttattgtggaagtgagattgttttggatggagca
cattatttttgtgagaatacattgtcctgtaagccacaaatggtaaagagcatagtacat
tttgcctgcagggaggccatgaatatagaaggatttagcgaaaaaactgcagagcagcta
tttgaaaaactagacataaagtctttaagtgatttatatactttaaagaaggaagaacta
ttaaccttagagaaatttggtgagaaaaaagcacaaaacttactaaatgctatagaaaaa
agcaaaaattgtgatttaagttcatttgtatactctttaggaatacctaatgtaggagta
aaaacttctaaggatttagctaagaactttaaaagtttggatggaatcagaaatgcaaag
gttgaagatctagtttctattcaagatataggagatatagttgcaaaaagcatagttgag
ttctttaaagatgaaagaattcaaaaatcaataaatgatcttttaaatttaggggttact
cctagatttgaagagacatcagtagttgagaatccattccaaggtaaaacagtagtcgtt
acaggaaccttgaagaactattctagaggagatatcaaagcaaaatttgaatctttaggt
gcaaaagtatcatctagtgtaagcaaaaaaacagattatgttttagcaggtgaagaagca
ggatccaagtataataaagctgtagaattaggagttaagatactttctgaagatgaattt
actgaaatgataaattga
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