Chryseobacterium camelliae: PFY12_13725
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Entry
PFY12_13725 CDS
T08762
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ccab
Chryseobacterium camelliae
Pathway
ccab03030
DNA replication
ccab03410
Base excision repair
ccab03420
Nucleotide excision repair
ccab03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ccab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PFY12_13725 (ligA)
03410 Base excision repair
PFY12_13725 (ligA)
03420 Nucleotide excision repair
PFY12_13725 (ligA)
03430 Mismatch repair
PFY12_13725 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ccab03032
]
PFY12_13725 (ligA)
03400 DNA repair and recombination proteins [BR:
ccab03400
]
PFY12_13725 (ligA)
Enzymes [BR:
ccab01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PFY12_13725 (ligA)
DNA replication proteins [BR:
ccab03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PFY12_13725 (ligA)
DNA repair and recombination proteins [BR:
ccab03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PFY12_13725 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PFY12_13725 (ligA)
MMR (mismatch excision repair)
DNA ligase
PFY12_13725 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PFY12_13725 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH
5_3_exonuc
RNA_lig_T4_1
zf-ribbon_3
RNA_ligase
BRCT_2
zf-IS66
A2L_zn_ribbon
Motif
Other DBs
NCBI-ProteinID:
WBV60091
LinkDB
All DBs
Position
complement(2972337..2974340)
Genome browser
AA seq
667 aa
AA seq
DB search
MSDNIQQKIEELRKELHQHNENYYLLDTPTISDYDFDVLLEELRDLEAKYPEFYDENSPT
VRVGGGITKVFPTVQHKFRMYSLDNSYDFNDLEDWEKRIIKTIDEPVEFVAELKYDGASI
SILYENGKLAQAVTRGDGFQGDEITANVRTISDIPLKLKGDFPEHFFMRGEIYLTRKNFD
KINKLREEEGLDPFMNPRNTASGSLKMQDSGEVRKRGLSSVLYQFISEDIPAKSHWELLQ
KAQSWGFKTSQQAKLCTTLDQVKEFITYWDTERHNLPFEIDGIVLKVNSLKQQRQLGYTA
KSPRWAMAYKFKAEKVETELQSVSYQVGRTGAITPVANLKPVLLAGTIVKRASLHNEDII
KKLDLHENDFVYVEKGGEIIPKIVGVNTEKRTDESKEIEYIKHCPECGTELVKIEDQAIH
FCPNELHCPPQVVGRMIHYVSRKALNIENLGSETIEQLYREKLIENPADFYVLTKEQLLP
LERMAEKSAQNIISGIEKSKEIPFEKVLYGIGIKHVGETVAKKLVKNFPTIEELKNATAE
ELCQVEDIGTKIAVSIVDFFANSENILIIERLKSYGVQLEKGESTNEVLSNALEGKTFLF
TGKLSLFTRESAEEMVEKHGGKNISAVSKNLNYLVVGEKAGSKLKKAQDIGTIEILDEQQ
FLDLIEK
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacaacattcaacaaaaaatagaagagcttcgtaaagagcttcatcagcataac
gaaaattattaccttttagatacacctaccatttcagattacgacttcgacgtattattg
gaagaacttcgtgatctggaagcaaaatatcctgaattttacgatgaaaactctcctacc
gtacgtgttggaggcggaattaccaaagttttccctaccgttcagcataaattcaggatg
tattctctggacaattcttatgattttaatgatcttgaagactgggaaaaaagaatcatc
aaaaccattgatgaacctgtagaatttgtagcagagctaaaatatgacggagcatcgatt
tctattctgtatgaaaacggaaaattggcacaggcagtcactcgtggcgatggttttcag
ggtgatgaaattacagccaatgttcgtaccatttcagatattccactgaaattaaaaggt
gattttcctgaacatttctttatgcgtggcgaaatttacctgacaagaaaaaactttgat
aagataaacaaattacgagaagaagaagggctggatccgttcatgaatccgagaaataca
gccagcggaagcctgaaaatgcaggacagcggtgaggtgagaaagcgtggactttcttct
gtattgtatcagtttatttctgaagatattcctgcaaaatcgcattgggaattgcttcaa
aaagcacaaagctggggtttcaaaacctctcagcaggcaaaattgtgtactactttagat
caggtaaaggaatttattacttactgggatactgaacgtcataatttaccctttgaaatc
gatggcattgttttaaaagtcaattcattaaaacaacaaagacaactgggatacaccgca
aaatctccgcgttgggcaatggcttataaatttaaagctgaaaaagtagagaccgaatta
caaagtgtttcttaccaggtcggaagaacaggagctatcactccggttgccaacctgaag
cctgttttgcttgccggaaccatcgtaaaaagggcatctttgcacaatgaagatattatc
aaaaaactggatttacatgaaaacgatttcgtctatgtagaaaaaggcggtgaaattatt
ccgaaaattgttggagtaaatacggagaaaagaacagatgaaagtaaggaaatcgaatac
atcaaacattgtcctgaatgtggaaccgaactggtaaaaattgaagatcaggccattcat
ttttgtccgaatgagcttcattgcccgccgcaagtagtgggaagaatgattcattatgtt
tccagaaaagctttgaatattgaaaacttaggaagcgaaaccatcgaacagttgtataga
gagaagcttattgaaaatccggcagatttttatgttttaacaaaagaacagctgctaccc
ttggaaagaatggcggaaaaatctgcacaaaacatcatttcagggatcgaaaaatcgaaa
gaaattccgtttgagaaggtattgtacggaatcggaataaaacatgtcggtgaaaccgtt
gccaaaaaattggtcaaaaacttccctactattgaagaactgaaaaatgctaccgctgaa
gagctttgtcaggtggaagacatcggaacaaaaattgcggtaagcatcgtagatttcttc
gccaattctgaaaatattttaatcattgaacgattaaaatcttatggagttcaactggaa
aaaggagaaagtaccaatgaagttctatcgaatgctttggaagggaaaacctttcttttc
accggaaaattatcattgtttacaagagaatctgccgaagaaatggtagaaaaacatggc
ggaaaaaacatctctgcagtttctaaaaatctgaattatcttgttgtgggcgagaaagca
ggaagcaaactgaaaaaagctcaggatatcggaacgattgaaattctggatgaacaacag
tttttagatctgatagagaaataa
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